HBVdb::Dataset - Hepatitis B Virus Database

Dataset for nucleotide sequence PreS1 of genotype D

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        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                       **    *                 *    *   *
ATGGGG------------CAGAATCTTTCCACCAGCAATCCTCTGGGATTCTTTCCCGACCACCAGTTGGATCCAGCCTT
      c           -       g                                t  t        c     a
                          c


        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                          ***    *    *                            *     *     *
CAGAGCAAACACcGCAAATCCAGATTGGGACTTCAATCCCAACAAGGACACCTGGCCAGACGCCAACAAGGTAGGAGCTG
  a      t  aaac  c           t                  c t      a t              g  g
            t g                                    a


       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*
GAGCATTCGGGCTGGGaTTCACCCCACCgCACGGAGGCCTTTTGGGGTGGAGCCCTCAGGCTCAGGGCATAcTACAAACc
    c a   a ca  tc    t  g  a        t  gc a  a        g  a     a    cga g  c  t
                g     a     t                                                  g


       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                       *
TTGCCAgCAAATCCGCCTCCTGCcTCtACCAATCGCCAGTCAGGAAGGCAGCCTACCCCgCTGTCTCCACCTTTGAGAaA
g     aa      a       tag cg       t gaa ga gc a  a  c  t  t   a    g  gc ac  g
c                      t           a                 g  a  a
a

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

CACTCATCCTCAGGCCATGCAGTGGAAcTCCACAACCTTCCACCAAACTCTGCAAGATCCCAGaGTGAGAGGCCTGTATT
t  g  c     a  a  a       ct aa ag  t  t  t   g gt a          ag    ag         c
   a                                a
   c

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
       **                            **     *
TCCCTGCTGGTGGCTCCAGTTCAGGAACAGTAAACCCTGTTCCGACTACTGcCTCTCcCaTATCGTCAATCTTCTCGAGG
t              a c     agg    g g        t   c    ta    a tc  t              a



       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*        *            **                                            *   *
ATTGGGGACCCTGCGCTGAACATGGAGAACATCACATCAGGATTCCTAGGACCCCTgCTCGTGTTACAGGCGGGGTTTTT
          t  tatc         a               c             t                      c
                a


       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   *     *                         *   *    *           *            **        *
CTTGTTGACAAGAATCCTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGaACtACCG
           a               aa   a                          g           ag ac
                                                                           a
                                                                           g

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
        *    *                           **              *             *     *
TGTGTCTTGGCCAAAATTCGCAGTCCCCAACCTCCAATCACTCACCAACCTCCTGTCCTCCAACTTGTCCTGGTTATCGC
      g                                             t        g           a     t



       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
            *                            *     ** *   * *   *              *
TGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTA
       a           c      a                 t          c



       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     *                **                       *    *
TCAAGGTATGTTGCCCGTtTGTCCTCTAATTCCAG------GATCtTCAACcAC---------CAGCacGGGACCATGCa
c gg              c      a gc                c  g  t               gt    a c   c
   c              g                          g     a                     t
                                             a

       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
      *    *                 *                                         *    ***
GAACCTGCAcGACTcCTGcTCAAGGAACCTCTATGTATCCCTCCTGTTGCTGTACCAAACCTTCGGACGGAAATTGCACC
ag       t  taat  t      c          t      a  c  t    ta     c t   ta    c     a
                                           t


       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  **    * * ** *     **         *   *  * *  *              *               *
TGTATTCCCATCCCATCATCcTGGGCTTTCGGAAAATTCCTATGGGAGTGGGCCTCAGCCCGTTTCTCCTGGCTCAGTTT
                    t          c                       t            a
                    a                                               t


      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
             *  *                *  *          *          *    *  *          ***
ACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTTTGGCTTTCAGTTATATGGATGATGTGGTATTGGG
         c                c              t   c       t      g t           g



      1130      1140      1150      1160      1170      1180      1190
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:..
                                         *       *
GGCCAAGTCTGTACAgCATCTTGAGTCCCTTTTTACCGCTGTTACCAATTTTCTTTTGTCTTTGGGTATACATTTAA
      aa   cgtca  c     ag      a   t                  c     c    cg     c g
            t  c