HBVdb

Dataset for nucleotide sequence PreS1 of genotype D

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        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                 *  *     *   * **  * **  *  * **  *  * *    ** 
---ATGGG---GC------------AGA---ATCTTTCCACCAGCAATCCTCTGGGATTCTTTCCCGACCACCAGTTGGA
                                   g                                        
                                   c                                            
                                                                                

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *  *                       *  *  *****   * *  *        *    * *            *   
TCCAGCCTTCAGAGCAAACACcGCAAATCCAGATTGGGACTTCAATCCCAACAAGGACACCTGGCCAGACGCCAACAAGG
c          a   g  tt aaac  c           t                  c t      a t          
                     t g                                    a                   
                                                                                

       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  **    **  *                   *                                               
TAGGAGCTGGAGCATTCGGGCTGGGaTTCACCCCACCgCACGGAGGCCTTTTGGGGTGGAGCCCTCAGGCTCAGGGCATA
    g  c     c a   a ca  tc       g  a        t  g  a  a        g  a     a    cg
       g                 g           t                                          
                                                                                

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
cTACAAACcTTGCCAgCAAATCCGCCTCCTGCcTCtACCAATCGCCAGTCAGGAAGGCAGCCTACCCCgCTGTCTCCACC
a g  c  tg     at g    a       tag c    c   t g a g  gc a  a  c  t  t   a       
         c      a               t                             g     a           
                                                                                

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
TTTGAGAaACACTCATCCTCAGGCCATGCAGTGGAAcTCCACAACCTTCCACCAAACTCTGCAAGATCCCAGaGTGAGAG
gc  c  g t  g  c     a   g a       ct aa a   t  t  t   g gt a          ag    ag 
            c                                a     a                          t 
                                                                                

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
             *  **                          * ** *   *     *                   *
GCCTGTATTTCCCTGCTGGTGGCTCCAGTTCAGGAACAGTAAACCCTGTTCCGACTACTGcCTCTCcCaTATCGTCAATC
    a   c t              a c   c a g   cg          t   c    t     a tc  t       
                                                                                
                                                                                

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
      * **    *   * **        ***           *          *        *            ***
TTCTCGAGGATTGGGGACCcTGCGCTGAACATGGAGAACATCACATCAGGATTCCTAGGACCCCTgCTCGTGTTACAGGC
       a        g  t  tatc         a               c             t              
                        aa                                                      
                                                                                

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *    *     *   * *     * *                 *   **  * *  **   * **      *     **
GGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGG
        c           a               aa                              g           
                                                                                
                                                                                

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
      *         **    *   *  *  *  *            * **   * * *   *  ***           
GaACtACCGTGTGTCTTGGCCAAAATTCGCAGTCCCCAACCTCCAATCACTCACCAACCTCCTGTCCTCCAACTTGTCCT
 g ac          g                                             t        g         
 c  g                                                                           
                                                                                

       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  * **       *      * *        **     *  * *  *  *      *  *  * *   *  ***  *  
GGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCT
  a     t       a                  a                 t                          
                                                                                
                                                                                

       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  * *     *   *         ***    **                       * *           *       * 
TCTGGACTATCAAGGTATGTTGCCCGTtTGTCCTCTAATTCCA------GGATCtTCAACc---------ACCAGCacGG
           gg              c     aa gc                c  g  t               gt  
            c              g                          a     a                   
                                                      g                         

       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     *         * *  *                 *                 **  *    **      *     *
GACCATGCaGAACCTGCAcGACTcCTGcTCAAGGAACCTCTATGTATCCCTCCTGTTGCTGTACCAAACCTTCGGACGGA
  t c   cag  t     t at  t  g   cg        at      a  c     ta     c t   ta  
                                                    t                           
                                                                                

       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*    ***   ***** * **** ** ** **    *  * ** **  * * **   ***  *     **  *     * 
AATTGCACCTGTATTCCCATCCCATCATCcTGGGCTTTCGGAAAATTCCTATGGGAGTGGGCCTCAGCCCGTTTCTCcTG
  c     a                    t                         c        t            a  
                             a                                               t  
                                                                                

      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    *      *    *  *  *  *     * *        *  *         **    *     *    ** *    
GCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTTTGGCTTTCAGTTATATGGATGATGT
                  c                c              t   c       t      g t        
                                                                       c        
                                                                                

      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
      ***  * *              *         *           *    *  *   *                *
GGTATTGGGGGCCAAGTCTGTACAGCATCTTGAGTCCCTTTTTACCGCTGTTACCAATTTTCTTTTGTCTTTGGGTATAC
               aa   cttca  c      g      a   t                    c   c    cg   
                     g  c                                                       
                                                                                

      
....:.
   * *
ATTTAA
  c g 
      
      
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