HBVdb

Dataset for nucleotide sequence PreS1 of genotype D

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        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                     * **    **  *  * **  *  * *    **  *  *    
ATGGGG------------CAGAATCTTTCCACCAGCAATCCTCTGGGATTCTTTCCCGACCACCAGTTGGATCCAGCCTT
      c           -       g                               t        c        
                          c                                                     
                                                                                

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                      *  *****   * *  *               *            *     *     *
CAGAGCAAACACcGCAAATCCAGATTGGGACTTCAATCCCAACAAGGACACCTGGCCAGACGCCAACAAGGTAGGAGCTG
  a      tt aaac  c           t                  c t      a t              g  g 
            t g                                    a                       c  c 
                                                                                

       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  *                                                                            
GAGCATTCGGGCTGGGaTTCACCCCACCgCACGGAGGCCTTTTGGGGTGGAGCCCTCAGGCTCAGGGCATAcTACAAACc
    c a   a ca  tc       g  a        t  g  a  a        g  a     a    cga g  c  t
                g           t                                          t        
                                                                                

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
TTGCCAgCAAATCCGCCTCCTGCcTCtACCAATCGCCAGTCAGGAAGGCAGCCTACCCCgCTGTCTCCACCTTTGAGAaA
g     aa      a       tag c        t gaa ga gc a  a  c  t  t   a    g  gc  c  g 
c                      t           a                 g  a  a                    
                                                                                

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
CACTCATCCTCAGGCCATGCAGTGGAAcTCCACAACCTTCCACCAAACTCTGCAAGATCCCAGaGTGAGAGGCCTGTATT
t  g  c     a  a  a        t aa ag at  t  t   g gt a          ag    ag         c
   c                                a                                t          
   a                                                                            

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    *  **                          * ** *   *                         *      *  
TCCCTGCTGGTGGCTCCAGTTCAGGAACAGTAAACCCTGTTCCGACTACTGcCTCTCcCaTATCGTCAATCTTCTCGAGG
ct                    c agg   cg          t   c    ta    a tc  t              
                               c                                                
                                                                                

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*        * **        ***           *                   *            **  *    *  
ATTGGGGACCcTGCGCTGAACATGGAGAACATCACATCAGGATTCCTAGGACCCCTgCTCGTGTTACAGGCGGGGTTTTT
 c        t  tatc   t     a               c             t                      c
               aa                                                               
                                                                                

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   *   * *     * *                 *   **  * *  **      *            **         
CTTGTTGACAAGAATCCTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGaACtACCG
           a               aa                              g           ag ac    
                                                                           g    
                                                                                

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
        *    *      *                  * **   *       *  **            *  * **  
TGTGTCTTGGCCAAAATTCGCAGTCCCCAACCTCCAATCACTCACCAACCTCCTGTCCTCCAACTTGTCCTGGTTATCGC
      g                                             t        g           a     t
                                                                                
                                                                                

       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     *      * *                  *       *     ** **  * *   *              *    
TGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTA
       a           c      a          c      t          c                        
                                                                                
                                                                                

       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     *          **    **                       *    *                       *   
TCAAGGTATGTTGCCCGTtTGTCCTCTAATTCCAG------GATCtTCAACcAC---------CAGCacGGGACCATGCa
  gg              c      a gc                c  g  t               gt    t c   c
   c              g                          a     a                     a      
                                             g                                  

       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
      * *  *        *        *                 **  *    **             *    *** 
GAACCTGCACGACTcCTGcTCAAGGAACCTCTATGTATCCCTCCTGTTGCTGTACCAAACCTTCGGACGGAAATTGCACC
ag  t     t at  t      c          t      a  c     ta     c t   ta    c     a
                                           t                                    
                                                                                

       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  ** *  * **** **  * **    *  * **  *  * *  *   **         **  *     *     *    
TGTATTCCCATCCCATCATCcTGGGCTTTCGGAAAATTCCTATGGGAGTGGGCCTCAGCCCGTTTCTCCTGGCTCAGTTT
                    t          c              c        t            a           
                    a                                               t           
                                                                                

      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
       *  *  *  *                *  *          *    *     *    ** *          ***
ACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTTTGGCTTTCAGTTATATGGATGATGTGGTATTGGG
         c                c              t   c       t      g t           g     
                                                              c                 
                                                                                

      1130      1140      1150      1160      1170      1180      1190       
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:..
  *                *         *           *    *  *   *                       
GGCCAAGTCTGTACAgCATCTTGAGTCCCTTTTTACCGCTGTTACCAATTTTCTTTTGTCTTTGGGTATACATTTAA
      aa   cttca  c     ag      a   t                  a c   c    cg     c g 
            g  c                                       c                     
                                                                             
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