HBVdb::Dataset - Hepatitis B Virus Database

Dataset for nucleotide sequence PreS2 of genotype C

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        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

ATGCAGTGGAACTCCAcaACaTTCCACCAAGCTCTGCTAGAtCCCAGAGTGAGGGGCCTaTAcTTTCCTGCTGGTGGCTC
gca  a     t    gc  t  t  t  ga    at    c  a a   acaa  t  c  tcac
                    c                                      g
                    g                                      t

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                   *
CAGTTCCGGAACAGTAAACCCTGTTCCGACTACTGCCTCaCCCATATCGTCAATCTTCTCGAGGACTGGGGACCCTGCAC
a     a  g    c  g            c t  t   t    cc  a          t  a  t            g
              g


       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*     *   *                **     *  *             *            *  *         *
CGAAcATGGAGAaCACaACATCAGGATTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATC
    t       g   cg                           c           t        c        a
    a


       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*             **  *    *     *       *               **            *
CTCACAATACCACAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCACCCACGTGTCCTGGCCAAAA
           g g                             g           a      aga
                                                                t


       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
             *        *           *           *     *      *
---TTcGCAGTCCCCAACCTCCAATCACTCACCAACCTCTTGTCCTCCAAtTTGTCCTGGcTATCGCTGGATGTGTCTGC
     t                       t  t      c        g cc        t     t
                                                            a


       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
           *     *        * *         *     * *      *       **  *         *
GGCGTTTTATCATaTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTACCAAGGTATGTTG
      c      c                            c      a g       g       t gg



       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   *                                                       *
CCCGTTTGTCCTCTACTTCCAGGAACA------TCA---ACtACCAGCACGGGaCCATGCAAGACCTGCACGAtTCCTGC
               a        t t      a g     c  a ct  a  g  c    ga        a caa
                          c              a                               g


       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
           *                    *       *                 *     *    *   **
TCAAGGAACCTCTATGTTTCCCTCTTGTTGCTGTACAAAACCTTCGGACGGAAAcTGCACTTGTATTCCCATCCCATCAT
    a c a     c a       a  c                     a    t     c                 g



       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                      ** *                                                   *
CcTGGGCTTTCGCAAGATTCCTATGGGAGTGGGCCTCAGTCCGTTTCTCCTGGCTCAGTTTACTAGTGCCATTTGTTCAG
t t        t  a                                 a                c
a                                               t


       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
            *                    *     *        *     *                      *
TGGTTCGTAGGGCTTTCCCCCACTGTTTGGCTTTCAGTTATATGGATGATGTGGTATTGGGGGCCAAGTCTGTACAACAT
  a    cc                 c          c  cg t           t        g   a



       810       820       830       840       850
....:....|....:....|....:....|....:....|....:....|....:...
   *      *              *        *           *    *
CTTGAgTCCCTTTTTACCtCTaTTACCAATTTTCTTTTGTCTTTGGGTATACATTTgA
     ag      a    g  g             gc a   c           c a