HBVdb

Dataset for nucleotide sequence PreS1 of genotype all

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        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
atggg---a-------ggttggtcttccaaacctcga------aaaggcATGGG---Ga---------------------
-----   -ctttctt---------------------      c-------      ac                     
        g        cacctctac a cga aatc      -ggt                                 
                    a   c           g      g                                    
                                                                                

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
------------------------cgA---ATCTTTCtgttccCAAtCCtCTGGGATTCTTtCCCGAtCAcCAGTTGGAc
            a           aa     c ac  caccaga  c  c        tc c  a gc  t   c    t
                        -         g  g  g        a           g                  
                                        a        g                              
                                                                                

       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
CCtGCaTTCagAGCcAActCaaacAATCCAGATTGGGACtTCAAcCCcaaCAAGGAccacTGGCCaG-acGCcAAcaAGG
  actg   gag  a  ta cgca g   c  c     tca   taagct   a  tact   a gc cgt acgtc   
  g  c                g                        a          ga     ta ta     g    
     t                                                               t          
                                                                                

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
TaGGA---GtgGGAgCATTCGGGCcaGGgTTCACcCCaCCaCAcGGcgG------------tcTtTTGGGGTGGAGCCCT
 g       ct   tgc at  t tg  ac   tt  t  c  t  aaa            ca gc          t  g
          a     t     a  t  t     a  c  g     g              ag                a
                      c              g  t     t               t                 
                                                                                

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
CAGGCTCAGGGCaTAtTgacaACagTGCCAgcAgctCCtCCTCCTGCCTCcACCAATCGgCAGTCAGGAA---GgCAG--
  a  a  a  tccgc acactatt at  atgaaa  g        a  tg       c g atc  gc    aa a  
            g ta cg t  c          tg  a        t           t   g                
                 t     g                                                        
                                                                                

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
CCTACtCCcaTcTCTCCACCTcTaAG------agACAcTCATCCT------CAGGCCATG---CAGTGGAAcTCCAcaaC
  a  c  gc aa        t g        ga a ga     a        a  agca     a     t  a gcga
  c     at g                          g     g                             t  tc 
        tg t                          c                                         
                                                                                

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
aTTCCACCAAgCTCTgCaa---GAtCCCAGAGTgAGgGgcCTgTAttTtCCTGCTGGTGGCTCCAGTTCaGGAACAGTaA
t  t  t  ga c  tttg   a c  g ag  ccaa-ct--a--cc c              a     c aggt cag 
c              a           a     a    --  t  --                              cc 
g                                         c                                     
                                          -                                     

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
aCCCTGtTCcGAcTAcTGcCTCtccCATaTCGTCAATCTtcTCGAgGAcTGGGGACCCTGcaccGAAcATGGAGAaCAtc
g     c  aa ac t  t   aga tcc  a    c  cagt  a  t     g  t  tgat   t     agg  ca
                      gtt                    c               tt          c      
                                                                                
                                                                                

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
aCATCAGGAtTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAgAATCCTCACAATACCaCAGAG
g        c    c        t    c           t  g     c        a               ga    
t                                                                               
                                                                                
                                                                                

       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
TCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAaCacCCgtGTGTCtTGGCCAAAATTcGCAGTCCCcAAcCT
                          g           aggtta  ac     c           t        a  t  
                                       ct c    g     g                          
                                        c      a                                
                                                                                

       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
CCAaTCACTCACCAACCTctTGTCCTCCAAtTTGTCCTGGtTATCGCTGGATGTGTCTGCGGCGTTTTATCATcTTCCTC
   g     t  t   t gc        g c         c     t       a                  a     t
                                        a                                       
                                                                                
                                                                                

       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  *                                                                             
TtCATCCTGC---TGCTATGCCTCATCTTCTTgTTGGTTCTTCTGGAcTAtCAAGGTATGTTGCCCGTTTGTCCTCTAaT
 g                              a         g    t gc  g              c        gc 
                                                                    g        c  
                                                                                
                                                                                

       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
TCCA------G------GAt---Ca------t------------CA------------ACc---------ACCAGcACgG
                   a    t      a          ca g              t           a  tgtc 
                        c      -                            a                 a 
                        -                                   g                   
                        g                                                       

      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
GACCaTGCAaaACCTGCACgAcTCCTGCTCAAGGaAcCTCTATGTtTCCCTCaTGTTGCTGTACaAAACCTtCGGAcGGA
 g  c   cgg       tagtaat  t      c a    t   a      t  c  t   t c     ca    ta  
                     g                              c                           
                                                                                
                                                                                

      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                     *                          
AAcTGCACcTGTATTCCCATCCCATCATCtTGGGCTTTCGcAAaATtCCTATGGGAGTGGGCCTCAGtCCGTTTCTCcTG
  t     t                 g  c        a g  g  a                    c         t  
                             a          t                                    a  
                                                                                
                                                                                

      1210      1220      1230      1240      1250      1260      1270      1280
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                         *                                                      
GCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTtTGGCTTTCAGtTATATGGATGATGT
              c  a              g  cc             t   c       t  c   g t      c 
                                                                              a 
                                                                                
                                                                                

      1290      1300      1310      1320      1330      1340      1350      1360
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
GGTaTTGGGGGCCAAGTCTGTACAaCATCTTGAgTCCCTTTtTaCCgCTgTTACCAATTTTCTTTTGTCTtTGGGTATAC
   tc       g  aa    g cg  c g   ag      a g  t  a     c       g  a   c    c  c 
                                                                      g         
                                                                                
                                                                                

      
....:.
      
ATTTaA
  c g 
      
      
      
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