HBVdb::Dataset - Hepatitis B Virus Database

Dataset for nucleotide sequence PreS1 of genotype all

[Download (right click)] [Download Frequencies (right click)] [Sequences] [Alignment]

        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

ATGgga---ggttggtcttccaaacctcgaaa------aggcatgGGGacgAATCTTTCtgtcccCAAtCCtCTGGGATT
   ---   --------------------cc-      ---------acaa  c ac  cactaga  c  c
     g   ctacctcgaa agtca aat--g      g  atg            g  g  g        a
          c     tgc g cg     gg                               a        g
                 cg

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

CTTtCCCGAtCAcCAGTTGGAcCCtGCaTTCagAGCcAActCaaacAATCCAGATTGGGACtTCAAcCCcaaCAAGGAcc
tc c  a gc  t   c    t  actg   gag  a  ta cgca g   c  c     tca   taagct   a  ta
   g                    g  c                g                        a
                           t


       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

acTGGCCaGacGCcAAcaAGGTaGGAG---tgGGAgCATTCGGGCcaGGgTTCACcCC---aCCaC---AcGGcgG----
ct   a gccgt acgtc    g   -  gct   tgc at  t tg  ac   tt     t--c cac t  aaa
ga     tata     g              a     t     a  t  t     a     c  g        g
          t                                c                 -  t        t


       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

--------tcTtTTGGGGTGGAGCCCTCAGGCTCAGGGCaTatTgacaACagTGCCAgCAgctCCtCCTCCTGCCTCcAC
        cg gc    a     t  g  a  a  a  tccgc acact tt at  atgaaa  g        a  tg
        aa                a            g ta cg t  c          tg  a        t
         t                                  t     g


       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

CAATCGgCAGTCAGGAAGgCAGCCTACtCCcaTcTCTCCACCTcTaAG------agACAcTCATCCTCAGGCCATGCAGT
      c g atc  gc aa a  a  c  gc ga        t gc       ga a ga     a  a  agca  a
      t   g             c     at a                          g     g
                              tg t                          c


       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

GGAAcTCCAcaaCaTTCCACCAAgCTCTg---CaaGATCCCAGAGTgAGgGgcCTgTAttTtCCTGCTGGTGGCTCCAGT
    t  a gcgac  t  t  ga c  t   ttg  c  g ag  ccaa ct  a--cc-c              a
       t  tc t              a           a     a        t  --
             g                                         c
                                                       -

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

TCaGGAACAGTaAaCCCTGtTCcGAcTAcTGcCTCtccCATaTCGTCAATCTtcTCGAgGAcTGGGGACCCTGcaccGAA
  c aggt cag g     c  aa ac t  t   aga tcc  a    c  cagt  a  t     g  t  tgat  c
          cc                        tt                    c               tt



       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

cATGGAGAaCAtcaCATCAGGAtTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAgAATCCTCA
t     a g  cag        c             t    c           t  g  c  c        a
      c      t



       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

CAATACCaCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAaCacCCgtGTGTCtTGGCCAAAAT---
       ga                              g           aggtta  ac     c
                                                    ct c    g     g
                                                     c      a


       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

TcGCAGTCCCcAAcCTCCAaTCACTCACCAACCTctTGTCCTCCAAtTTGTCCTGGtTATCGCTGGATGTGTCTGCGGCG
t        a  t     g     t  t   t gc        g c         c     t       a
                                                        a



       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

TTTTATCATcTTCCTCTtCATCCTGCT---GCTATGCCTCATCTTCTTgTTGGTTCTTCTGGAcTAtCAAGGTATGTTGC
         a       g                              a         g    t gc  g




       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

CCGTTTGTCCTCTAaTTCCAGG------AtCatCAACc------------aCCAGcACgGGACCaTGCAaaACCTGCACg
    c        gc              a ta-g--tac    acaaca--a  tgtc  g  c   cgg       ta
    g        c                 c- -  a                    a
                               g     -
                                     g

       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

AcTCCTGCTCAAGGaAcCTCTATGTtTCCCTCaTGTTGCTGTACaAAACCTtCGGAcGGAAAtTGCACcTGTATTCCCAT
gt at  t      c a    tc  a      t  c  t   t c     cat   t     c     t
g                              c



      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

CCCATCATCtTGGGCTTTCGcAAaATtCCTATGGGAGTGGGCCTCAGtCCGTTTCTCcTGGCTCAGTTTACTAGTGCCAT
      g  c        a g  g  a                    c         t                c  a
         a          t                                    a



      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

TTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTtTGGCTTTCAGtTATATGGATGATGTGGTaTTGGGGGCCAAGTCTG
            g  cc             t   c       t  c   g t      c    tc       g  aa
                                                          a



      1210      1220      1230      1240      1250      1260
....:....|....:....|....:....|....:....|....:....|....:....|....:.

TACAaCATCTTGAgTCCCTTTtTaCCgCTgTTACCAATTTTCTTTTGTCTtTGGGTATACATTTaA
g cg  c g   ag      a g  t  a     c       gc a   c    c  c   c-g-
                                                  g             -