HBVdb::Dataset - Hepatitis B Virus Database

Dataset for nucleotide sequence PreS1 of genotype all

[Download (right click)] [Download Frequencies (right click)] [Sequences] [Alignment]

        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

ATGgga---ggttggtcttccaaacctcgaaa------aggcatg---GGGacgAATCTTTCtgttccCAAtCCtCTGGG
------   --------------------cc-      -------     acaa  c ac  caccaga  c  c
     g   ctacctcgaa agtca aat--g      g aatg               g  g  g        a
          c  a  tgc g cg     gg                                  a        g
                 c

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

ATTCTTtCCCGAtCAcCAGTTGGAcCCtGCaTTCagAGCcAActCaaacAATCCAGATTGGGACtTCAAcCCcaaCAAGG
   tc c  a gc  t   c    t  actg   gag  a  ta cgca g   c  c     tca   taagct   a
      g                    g  c                g                        at
                              t


       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

AccacTGGCCaGacGCcAAcaAGGTaGGA---GtgGGAGCATTCGGGCcaGGgTTCACcCC---aC---CaCAcGGcgg-
tact   a gccgt acgtc    g       ct   tgc at  t tg  ac   tt     t ca -c  t  aa-c
   ga     tata   t g              a     t     a  t  t     a     c     g     g a
             t                                c                       t     t
                                                                      -

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

-----------tcTtTTGGGGTGGAGCCCTCAGGCTCAGGGCaTAtTgacaACagTGCCAgcAgctCCtCCTCCTGCCTC
          gca gc          t  g  a  a  a  tccgc acactatt at  atgaaa  g        a
          aag                a            g ta cg t  c          tg  a        t
           -t                                  t     g


       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

cACCAATCGgCAGTCAGGAAGgC---AGCCTACtCCcaTcTCTCCACCTcTaAG------agACAcTCATCCTCAGGCCA
tg       c g atc  gc aa    a  a  c  gc aa        t g        ga a ga     a  a  ag
         t   g                c     at g                          g     g
                                    tg t                          c


       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

TGCAGTGGAAcTCCAcaaCaTTCCACCAAgCTCTg---CaaGAtCCCAGAGTgAGgGgcCTgTAttTtCCTGCTGGTGGC
ca  a     t  a gcgac  t  t  ga c  t   ttga c  g ag  ccaa ct--a--cc c
             t  tc t              a           a     a    --  t  --
                   g                                         c
                                                             -

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

TCCAGTTCaGGAACAGTaAaCCCTGtTCcGAcTAcTGcCTCtccCATaTCGTCAATCTtctCGAgGAcTGGGGACCCTGc
  a     c aggt cag g     c  aa ac t  t   aga tcc  a    c  cagt  a  t     g  t  t
                cc                       gtt                    c



       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

accGAAcATGGAGAaCAtcaCATCAGGAtTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAgAA
gat   t     agg  cag        c    c        t    c           t  g     c        a
tt          c      t



       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

TCCTCACAATACCaCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAaCacCCgtGTGTCtTGGCCAA
             ga                              g           aggtta  ac     c
                                                          ct c    g     g
                                                           c g    a


       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

AATTcGCAGTCCCcAAcCTCCAaTCACTCACCAACCTctTGTCCTCCAAtTTGTCCTGGtTATCGCTGGATGTGTCTGCG
    t        a  t     g     t  t   t gc        g c         c     t       a
                                                           a



       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

GCGTTTTATCATcTTCCTCTtCATCCTGCT---GCTATGCCTCATCTTCTTgTTGGTTCTTCTGGAcTAtCAAGGTATGT
            a     t g                              a         g    t gc  g




       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

TGCCCGTTTGTCCTCTAaTTCCAGG------At------C---atCAACcA------------CCAGcACgGGACCaTGC
       c        gc              a          ta g  t cc          --  tgtc  g  c
       g        c                          c     a              a
                                                 g


       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

AaaACCTGCACgAcTCCTGCTCAAGGaAcCTCTATGTtTCCCTCaTGTTGCTGTACaAAACCTtCGGAcGGAAAtTGCAC
cgg       tagtaat  t      c a    t   a      t  c  t   t c     ca    ta    c
                                            c



      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

cTGTATTCCCATCCCATCaTCtTGGGCTTTCGcAAaATtCCTATGGGAGTGGGCCTCAGtCCGTTTCTCcTGGCTCAGTT
t                 g  c        a g  g  a                    c         t
                     a          t                                    a



      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                 *
TACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTtTGGCTTTCAGtTATATGGATGATGTGGTaTTGG
      c  a              g  cc             t   c       t  c   g t      c    tc
                                                                      a



      1210      1220      1230      1240      1250      1260      1270
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:...

GGGCCAAGTCTGTACAaCATCTTGAgTCCCTTTtTaCCgCTgTTACCAATTTTCTTTTGTCTtTGGGTATACATTTaA
    g  aa    g cg  c g   ag      a g  t  a     c       gc a   c    c  c   c g
                                                              g