HBVdb

Dataset for nucleotide sequence PreS1 of genotype H

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        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
****** ********** ***** ******** *********** ** ***************************** **
ATGGGAGCACCTCTCTCaACGGCGAGAAGGGGCATGGGACAGAAtCTTTCTGTGCCCAATCCTCTGGGATTCTTTCCAGA
      t          c     r        y           c  c                             m  
                       a        t           y                                g  
                                                                                

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
************* ************* ***************** ************ ** ************** ***
CCACCAGTTGGATCCACTATTCAGAGCAAATTCCAGCAGTCCCGATTGGGACTTCAACACAAACAAGGACAATTGGCCAA
             v             c                 c            g  g              g   
                                                                                
                                                                                

       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  **************** ***** *** ***** ***** *********** ***** ******************** 
TGGCAAACAAGGTAGGAGTGGGAGGCTTCGGTCCAGGGTTCACACCCCCACACGGTGGCCTTCTGGGGTGGAGCCCTCAG
ca                c     c   t     c     t           t     g                    a
                                                                                
                                                                                

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
***** ****** * ******* ****** * *** ***** ******* ** *** ***********  * ********
GCACAGGGCATTCTgACAACCTcGCCACCAGATCCACCTCCTGCTTCCACCAATCGGAGGTCAGGAAGAAAGCCAACCCC
     r      a a       t      c t   w     c       a  c   a           gm a        
                             t                                       c          
                                                                                

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* ***** **********  * ***********                     *  *  *   **  *** * * **  
AGTCTCTCCACCTCTAAGGGACACACATCCACAGGCCATGCAGTGGAACTCAACACAGTTCCACCAAGCACTGTTGGATC
 a     t          ac g           nnnygnnnnnnnnnnnnnnct ag ca aca  tc   a c a  ct
                                    nn                                          
                                    m                                           

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*** *** *****          ********************* ******* * ** **  ********** *******
CGAGAGTaAGGGGtCTGTATtTTCCTGCTGGTGGCTCCAGTTCAGAAACACAGAACCCTGCTCCGACTATTGcCTCTCTC
   a   g     g------c--                     a       a g  y  tg          t       
       c          g -                                                           
                                                                                

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 **** **** ******** ********* ****   ******** *********************** ********* 
ACATCATCAATCTTCTCGAAGACTGGGGACCCTGcTATGAACATGGAGAACATCACATCAGGACTCCTAGGACCCCTTCT
g    g    c        m         t    tyc        a                       a         c
                                                                                
                                                                                

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*********** ***** ***** ********** *** *********   *****************************
CGTGTTACAGGCGGTGTgTTTCTTGTTGACAAAAATCCTCACAATACCAcAGAGTCTAGACTCGTGGTGGACTTCTCTCA
           g     t     c          g   k         cag                             
                                      g                                         
                                                                                

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
********* ***************************** ************************** ** *** ******
ATTTTCTAGGGGTACCACCCGGGTGTCCTGGCCAAAATTCGCAGTCCCCAATCTCCAATCACTTACCAACCTCCTGTCCT
         a                             y                          a  t   t      
                                                                                
                                                                                

       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
********************* *************************************** ******* ****   *  
CCAACTTGTCCTGGCTATCGTTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTT
                     c                                       g       g    tca cg
                                                                                
                                                                                

       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 ***   **   ************************************************  **************** *
CTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTGTGTCCTCTACTTCCAGGATCtACAACCACCAGCACGGGAC
t   cct  gtg                                                at                t 
                                                            wc                  
                                                                                

       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
******* *********** * ********** ******** ******* ** ** ****  ******************
CCTGCAAAACCTGCACCACTCTTGCTCAAGGAACCTCTATGTTTCCCTCCTGCTGCTGTACCAAACCTTCGGACGGAAAT
       g           g y          c        c       t  t  t    ta                  
                                                                                
                                                                                

       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*********************** *********** ***** *********** ******************** *****
TGCACCTGTATTCCCATCCCATCATCTTGGGCTTTCGGAAAATACCTATGGGAGTGGGCCTCAGCCCGTTTCTCTTGGCT
                       g           a     t           t                    a     
                                                     c                          
                                                                                

      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*********** ** ***** *************** ********** *** **** **  * *** ******** ****
CAGTTTACTAGTGCAATTTGtTCAGTGGTGCGTAGGGCTTTCCCCCACTGTCTGGCTTTTAGTTATATGGATGATtTGGT
           c  c     c               a          t   t    c  cg c   g        c    
                                                                           g    
                                                                                

      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
****************** ** ********* ** *********************************************
ATTGGGGGCCAAATCTGTGCAGCATCTTGAGTCCCTTTATACCGCTGTTACCAATTTTTTGTTATCTGTGGGCATCCATT
                  a  a         g  a                                             
                                                                                
                                                                                

   
...
* *
TgA
 a 
 r 
   
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