HBVdb

Dataset for nucleotide sequence P of genotype F

[Download (right click)] [Download Frequencies (right click)] [Sequences] [Alignment]

        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
****** **** ****    ***** **         * * * *           *  * **                  
ATGCCCCTATCcTATCCACACTTCCGGAAACTACTGTTGTTAGACGACG------AGGCAGGTCCCCTaGAAGAAGAACT
           t                 gt g     a     ga a            annnnncnnnnnnnnnnn
                                             c                  t   n           
                                                                                
                                                                                

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
        * *   ****** *** * *  * * *   *     **** *******   * **   *****  ** **  
CCCTCGCCTCGCaGACGAAGgTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCCAGCTTCCCAATGTTAGTATTCCTT
nnnnnnnn    ca      a        a   g     cac               t      gc              
                                                                                
                                                                                
                                                                                

       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   * *       ***    *  *  ** ** ** **  ******  **    *  *** *  * **    *  **   *
GGACTCATAAGGTGGGAAAtTTTACGGGgCTcTAtTCtTCTACTGTtCCTaCTTTtAATCCTgACTGGTTAACTCCTTCT
       c    k      c     a  a  t  c         a   g    c   t  a t   gcc         
            g                                 g   r           c       g         
                                                                                
                                                                                

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*****  * ***** *  **  *  *    **    *  ** ** *  *  ** ** **  * ** *   * **      
TTTCCTGAtATTCATTTaCATCAAGAtcTGATAtctAAATGTGAACAATTTGTAGGCCCtCTcACaAAAAATGAATTgAG
      a c        g  cg ga ct a  tcac               g  t   t  c           ac 
                                   a                        a  t              
                                                                                
                                                                                

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    ** *** *  * *****  * * * * *  ** *     ** ***** ** *      * ** *  ** ** **  
AAGaTTaAAATTggTtATGCCAgCcAGATTtTtTCCTAAggTTACcAAATAtTTTCCTaTGGAaAAaGGaATtAAACCcT
g  g  g     aa c      t t     c      ac c  t     c     cc a  g  g  c  c  g  
                                             a            t    c     g          
                                                               t     t          
                                                                                

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* ****   *  *    *********** **  *  *    ** ***   * ***  * *** *    **     **** 
ATTATCCTGAgcAtGcaGTTAATCATTAtTTTAAgACcAGACAtTATTTGCATACTTTATGGAAgGCgGGaATttTATAT
       a  ta cttg           c    a     c            c t     a  a  c  cc     
                            y      t                          r  r      y     
                                                                                
                                                                                

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   *   *     *    * **   * ** ** ** ** *  **  * ****** ** *   ****************  
AAGAGAGAATCCACACGTAGCGCCTCATTTTGTGGGTCACCATATTCcTGGGAACAAGAGCTACAGCATGGGAGCACCTC
  r r r       c a      a                       t         a                      
                                                                                
                                                                                
                                                                                

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  **  *      *** ** * * *    *****  * ** ***** ** ***** *** * **  * *****  *****
TcTCAACGACacGAAGgGGCATGGGACaGAATCTcTCTGTgCCCAATCCtCTGGGaTTCTTtCCAGACCATCAGCTGGAT
 a        ta    a          t          a        a     c   c g   r a            
          g                                      g                              
                                                                                
                                                                                

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**  * ****   ** ** *** **   * ** *****  ******    ******   *********  * ***** **
CCtCTaTTCAGgGCAAATTCCAGCAGTCCCGAcTGGGACTTCAACAaAAACAAGGACAaTTGGCCAATGGCAAACAAGGT
   t    aa          a         t             c gc        c                     
                                                          g                     
                                                                                
                                                                                

       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* *      **     *   * **  * *  ** **    ***** *** *  * ** * *** ** *  ** ** **  
AGGAG---TGGGAGGaTACGGTCCaGGGTTCACACCCCCACACGGTGGCCTGtTGGGGTGGAGcCCtCAGGCACAgGGTG
            g ct     c      t        t         t  c    a     t  a  a     a   a
               c                                                              
                                                                                
                                                                                

       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   *  * **   * **    * ** ***    *  *********           *   *              * * *
TgcTaACAACcTTGCCAGCAGATCCGCCTCCTGCTTCCACCAATCGGCGGTCCGGGAGaAAgCCAACCCCAGTCTCTCCA
 tt     a       tga    a        cc           a aa g  a  g  a                  
                                                                              
                                                                              
                                                                              

       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    * *  ** ** ** ** **             *   *       ** **                           
CCTCTAAGAGACACaCATCCACAGGCcATGCAGTGGAACTCaACtCAGTTCCACCAGGCtCTGTTaGATCCgAGGGTAAG
        g     t           ag a  a     ta ct c     t  t  aa ct    g  c  c aa    a
              c                                                        a        
                                                                                
                                                                                

       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                           ***   * *  * *** ****
GGCTCTGTAttTtCCTGCTGGTGGCTCCAGTTCAGaGACaCAGAACCCTGCTCCGACTATTGCCTCTCTCACATCATCAA
    -----cc-c                      ga  g  a       t             y    t          
        g-- -                                                                   
                                                                                
                                                                                

      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  *    **  ***** * ** **     * **  ** * *      **   ** **    **  ** * *   * *   
TCTTCTcGAAGACTGGGGGCCCTGCTAtGAACATGGAcAACATCACATCAGGACTCCTAGGACCCCTGCTCGTGTTACAG
 c  t         c  t   c c         g g  ctt         a    a                    
   a              a      a                                                      
                                                                                
                                                                                

      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* ** *  *  **  *  * **   *** ** **  ***   *  **  *** ** ***** ***** ** ****** * 
GCGGTGTGTTTCTTGTTGACAAAAATCCTCACAATACCACAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGG
       t  c      t        g  a   g    g                             g        a
       c                                                                        
                                                                                
                                                                                

      1210      1220      1230      1240      1250      1260      1270      1280
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*     * *   ***** ** ******  * * *********************** *****  *******  * *****
GGGActACCCGGGTGTCCTGGCCAAAATTCGCAGTCCCCAACCTCCAATCACTTACCAACCTCCTGTCCTCCAACTTGTC
  a ac   a                                                                      
  r                                                                             
  c                                                                             
                                                                                

      1290      1300      1310      1320      1330      1340      1350      1360
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 **  ***** * *  ** ** ** ***** ****** ******* *********** ******** *************
CTGGCTATCGtTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTT
    t     c                                                                     
                                                                                
                                                                                
                                                                                

      1370      1380      1390      1400      1410      1420      1430      1440
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*** **** *     ***** ******** ***** *        *                        *** *** **
CTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAcTTCCAGGATCcACGACCA------------CCAGCACGGG
   g       c  g                        a          tt a   -           a          
                                                  a                             
                                                                                
                                                                                

      1450      1460      1470      1480      1490      1500      1510      1520
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*   ****   **** **  ** **** * *   ** * **** * ***** ** ** *** * * *** * *** ****
ACCaTGCAAAACCTGCACAACTCTTGCTCAAGGAACCTCTATGTTTCCCTCcTGtTGCTGTTCcAAACCcTCGGACGGAA
   c     g               a     c                 t  c  t   a a     t          
                                                   a           m     y          
                                                                                
                                                                                

      1530      1540      1550      1560      1570      1580      1590      1600
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* ***** *********** ***** **   ** *** ***** * ********  ** * ****  ** ** *** * *
ACTGCACtTGTATTCCCATCCCATCATCtTGGGCTTTAGGAAAATACCTATGGGAGTGGGCCTCAGCCCGTTTCTCCTGG
       c                    c                                             t   
                                                                            a   
                                                                                
                                                                                

      1610      1620      1630      1640      1650      1660      1670      1680
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**** ******* ***  *  ** ***** * **  * * ********* *** **** **     *    **** * **
CTCAGTTTACTAGTGCAATTTGTTCAGTGGTGCGTAGGGCTTTCCCCCACTGTcTGGCTTTTAGTTATATGGATGATCTG
    a                              c             t   t              g           
    k                                                                           
                                                                                
                                                                                

      1690      1700      1710      1720      1730      1740      1750      1760
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*** **** ** *** **   *   * *  **  *  * **  *   * ** * *****  *  ****  ****  ** *
GTATTGGGGGCCAAATCTGTGCAGCATCTTGAGTCCCTTTATACCGCTGTTACCAATTTTCTGTTATCTGTGGGTATCCA
                    t  a  c                                 t        t          
                                                                                
                                                                                
                                                                                

      1770      1780      1790      1800      1810      1820      1830      1840
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  * **  *  * ** ** **  * ***** **     *  * ** **  *  *    ** *   **   **  * ** *
TTTaAATACcTCtAAAACaAAAAGATGGGGTTAcacccTAcATTTcATGGGTTATGTtATTGGcAGTTGGGGAtCaTTAC
   g  cg tg g     g  gc       c  ttatt ca    t         c     t         g g  g 
                  t                 a                  a     a         a      
                                                                                
                                                                                

      1850      1860      1870      1880      1890      1900      1910      1920
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* **  * ** **    *  **  * *     *   *    *** * ***      ** **  * ** ***** ** ** 
CcCAAGATCAcATTGTACAcAAAaTCAAAGAtTGTTTTcGtAAACTTCCTGTAAATCGtCCaATTGAtTGGAAAGTTTGT
 a        t   a t  a  gc   rg  a  c   a a     g           c   a  c        c  c
 t                             c        g                 a               a   
                                                                                
                                                                                

      1930      1940      1950      1960      1970      1980      1990      2000
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**  *  * ** **  *  ***  ** ** ** *  *   * ***** ** ** ** ***********     *    **
CAaCGcATTGTGGGtCTTTTGGGCTTTGCcGCcCCtTTtACcCAATGTGGTTATCCTGCTCTCATGCCTcTGTATgCCTG
    a       c          t  t  c  c  t     c                     t a  caat  
                             g           a                                      
                             a                                                  
                                                                                

      2010      2020      2030      2040      2050      2060      2070      2080
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 ** *  ** **  * ** ***** ** ****  ** *  **  *****         **  **    **** * *** *
TATaACTGCtAAACAGGCTTTTGTCTTTTCGCCAACTTACAAGGCCTTTCTaTGTaAACAaTACATGAACCTTTACCCCG
   t  c  g        g     t  c        c      a       c   c      gc c            
   c              c                 a              g                            
                                                                                
                                                                                

      2090      2100      2110      2120      2130      2140      2150      2160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**    ******** * *** * ********** ****** ** ** ***                              
TTGCTCGGCAACGGCCAGGCCTGTGCCAAGTGTTTGCTGACGCAACCCCCACTGGTTGGGGCTTGGCCATTGGCCATCAG
    ca          g                       t     t        c                        
                                                                                
                                                                                
                                                                                

      2170      2180      2190      2200      2210      2220      2230      2240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     **  *   * ***  ******  * ******* * * ** **  **   *  ** ** ** *** ** *  *** 
CGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTTGCAGCtTGTTTCGCTCGCAGCCGGTC
                             a              a        a     c  c            a    
                                                                                
                                                                                
                                                                                

      2250      2260      2270      2280      2290      2300      2310      2320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
***  *     * *  ** ** *     ** *  *  **  *  * ** ** *  ** ** *********** ** **  
TGGAGCGAaacTcATCGGcACaGACAACTCTGTTGTCCTCTCTaGGAAGTACACCTCCTTcCCATGGCTGCTCGGtTGTG
      agcta t     g  g     t     c  a     cc                t              a    
        gcg                                m                               g    
                                                                           c    
                                                                                

      2330      2340      2350      2360      2370      2380      2390      2400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
***  ** ***** **  * ** ****  ***** ***** ** ** * ********* ** ***** *  **  **** 
CTGCcAACTGGATCCTgCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCcGCGGACGAcCCCTCtCGGGGt
    a                                    a  a           a        t  t      c
                                                          t                     
                                                                                
                                                                                

      2410      2420      2430      2440      2450      2460      2470      2480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**  * **  * *  ** **     * * **  * ***    ** ** ***** *    ****** * ***** * * **
CGCTTGGGGcTgTAcCGCCCcCTTCTcCGTCTGCCGTTCCAGCCgACgACGGGTCGCACCTCTCTTTACGCGGaCTCCCC
  tc a  ag c tt     t     g     a t     g   a  c                         c      
           a              t                    a                         t      
                                                                                
                                                                                

      2490      2500      2510      2520      2530      2540      2550   
....:....|....:....|....:....|....:....|....:....|....:....|....:....|...
   *** *** * *    ****   ************ ***************     **** **  ** ***
GTCTGTTCCTTCTCATCTGCCGGaCCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGA
      g       g        t                             a a      a          
                                                                         
                                                                         
                                                                         
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