HBVdb::Dataset - Hepatitis B Virus Database

Dataset for nucleotide sequence P of genotype D

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        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
****      *    *      **  *         *
ATGCCCCTATCtTATCAACACTTCCGGAgACTaCTGTTgTTAGACGAC------GAGGCAG------GTCCCCTAGAAGA
           c       g        a t tg    a     ga a        c           a  t     g
                                g           tc                      c


        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                            *
AGAACTCCCTCGCCTCGCAGACGAAGgTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAAt---CTCAATGTTA
           a              a   a              c     a  a     a   gcc    ca c



       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
        **    *  *  *   *              * **                      *   *     **
GTATTCCTTGGACTCATAAGGTGGGaAAcTTTACgGGGCTTTATTCTTCTACTGTaCCTGTCTTTAAcCCTCATTGGAAA
a   c  c     g  c  a     g gt     t  t  c  c  c  ct  act   a       t  aa c
                         t        a                    g


       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
             * *     ** *   *              *       **                   *   *
ACA---CCcTCTTTTCCTAATATACATTTACACCAAGACATtATCAAAAAATGTGAACAaTTTGTAGGcCCACTcACAGT
        aa       c  c  t  c  g  t     t  c  t  c g         g  c     t  t  t  ta
        t           g                          g                    g  g


       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

cAATGAgAAAaGAAGAcTGCAATTgATTATGCCTGCTAGGTTTTATCCAAAtGTTACCAAATATTTgCCATTgGATAAGG
t     a   c    gt aa    a  c        c  a  c  c  t  gtcc  t        a  c  a  c
a                                               c  a g               t
g                                                  c

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
         *    ** *      *                *              *      *     * **  *
GTATTAAACCTTATTATCCAGAACATCTAGTTAATCATTACTTCCAAACcAGACAtTATTTACACACTCTATGGAAGGCG
c  c     c  c  c  g     ct g   g          t   g t     c        t t   t   c    a
                          g                      a                    g
                          a

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**     * *
GGTaTATTATATAAGAGAGAAACAACACaTAGCGCCTCATTTTGTGGGTCACCATATTCTTGGGAACAAgAgCTACAGCA
   g t               t t  t g            c     a   t     a           a ta   gt
     c


       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                        *    * *  *    **  *  *
T---------------------------------GGGG---CAGAA---TCTTTCCACCAGCAATCCTCTGGGATTCTTT
                                                    g
                                                    c


       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*      * *    **  ** *  *    *                  *  *****   * *  *    *
CCCGACCACCAGTTGGATCCAGCCTTCAGAGCAAACACcGCAAATCCAGATTGGGACTTCAATCCCAACAAGGACACCTG
  g  t  t        c          a   g  t  aagc  c           t                  c t
                                      tta                                    a


       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*      *     **    *
GCCAGACGCCAACAAGGTAGGAGCTGGAGCATTCGGGCTGGGaTTCACCCCACCgCACGGAGGCCTTTTGGGGTGGAGCC
    a t              g  g     c     a ca  tc    a     a        t  gc a  a
                        c     g           g           t


       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

CTCAGGCTCAGGGCATAcTACAAACcTTGCCAgCAAATCCGCCTCCTGCcTCtACCAATCGCCAGTCAGGAAGGCAGCCT
g  a     a    cga g  c  tg     aa      a     g tag c    g   t gaa ga gc a  a  c
                 t        c                      t           a                 g


       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

ACCCCgCTGTCTCCACCTTTGAGAaACACTCATCCTCAGGCCATGCAGTGGAAcTCCACAACCTTCCACCAAACTCTGCA
  t  t   a    g  gc  c  g t  g  c     a  a  a       ct aa ag at  t  t   g gt a
  a  a                       c                                a
                             a

       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                            **
AGATCCCAGaGTGA---------G---------AGGCCTGTAT---------TTCCCTGCTGGTGGCTCCAGTTCAGGAA
       -ag----         a         g---------         c-t              a c   c agg
        --             -         -      a           -
                                 t

      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
        *  *     *                         *      *           * **        ***
CAGTAAACCCTGTTCCGACTACTGcCTCTCcCaTATCGTCAATCTTCTCGAGGATTGGGGACCcTGCGCTGAACATGGAG
   cg          t   c    ta  g a tc  t              a           t  tatc         a
    c                                                                a


      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
        *                 * *          * ** **    *     *   * *     * *
AACATCACATCAGGATTCCTAGGACCCCTgCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACC
               c             t                      c           a



      1210      1220      1230      1240      1250      1260      1270      1280
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
        *   **   **  ***     *            **        *        *    *     **
GCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGaACtACCGTGTGTCTTGGCCAAAATTCGCAGTCCC
aa                              g           ag ac          g
                                             c  g
                                                a

      1290      1300      1310      1320      1330      1340      1350      1360
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
        *     **   *       *  *            **  *
CAACCTCCAATCACTCACCAACCTCCTGTCCTCCAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATc
                         t        g           a     t       a           c      a



      1370      1380      1390      1400      1410      1420      1430      1440
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     **       *     ** **  * *   *             **         *  *       **    **
TTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTtTGTCCTCT
          c      t          c                        c gg              c     aa
                                                        c              g


      1450      1460      1470      1480      1490      1500      1510      1520
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                         **                      *        ** *  *        *
AATTCCAGG------ATCtTCAACcACCA---------GCacGGGACCATGCaGAACCTGCAcGACTcCTGcTCAAGGAA
gc                c  g  t               gt    t c   cag  t    t  tcat  t      c
                  a     a                     a       c  a
                  g

      1530      1540      1550      1560      1570      1580      1590      1600
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  *                 *        ***            ** * ***  *** *  * **** *     **
CCTCTATGTATCCCTCCTGTTGCTGTACCAAACCTTCGGACGGAAATTGCACCTGTATTCCCATCCCATCATCcTGGGCT
         t      a  c  t    ta     c t   ta    c     a                    t
                t                                                        a


      1610      1620      1630      1640      1650      1660      1670      1680
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  *  *  *  * *  *   **      ** *   *     *     *     *     *  *  *  **  *
TTCGGAAAATTCCTATGGGAGTGGGCCTCAGCCCGTTTCTCCTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGT
                   c        t            a                    c                c
                                         t


      1690      1700      1710      1720      1730      1740      1750      1760
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
      *  *     *    *    *     *    ** *     *    ***  *                *      *
AGGGCTTTCCCCCACTGTTTGGCTTTCAGTTATATGGATGATGTGGTATTGGGGGCCAAGTCTGTACAgCATCTTGAGTC
              t   c       t      g t           g           aa   cttca  c     ag
                                   c                             g  c


      1770      1780      1790      1800      1810      1820      1830      1840
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
              *       **  *        *     *        *          *        *** *
CCTTTTTACCGCTGTTACCAATTTTCTTTTGTCTTTGGGTATACATTTAAACCCTAACAAAACaAAaAGATGGGGTTACT
     a                      c c   c    cg     c g  t  ccct  g  t  gc g     g  tc
                            a     g                    g       g           c
                                                               c

      1850      1860      1870      1880      1890      1900      1910      1920
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
        *    * *        *                                            *       **
CTtTacATTTcATGGGcTATGTCATTGGAtGTTATGGgTCaTTGCCACAAGAtCACATCAtACAgAAAATCAAAGAaTGT
acc ga c  t     t   agt     ta  cgg  a  c  a  g  g  a  t  tgg  ta  gc g cg  c  c
    c           g           cg       t              g       a   c     t g   t
    t           a                                               t           g

      1930      1940      1950      1960      1970      1980      1990      2000
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
            **           *  * *                  *    *                 *  ** **
TTTAGAAAACTTCCTgTTAACAGgCCTATTGATTGGAAAGTcTGTCAACGtATTGTGGGTCTTTTGGGtTTTGCTGCCCC
  cc g     c   a cc tc a  a              a     ga a  c  a  c  cc a  g     c  t
                          c              g        c                 c        a
                                         t                          a

      2010      2020      2030      2040      2050      2060      2070      2080
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**    **  * *  ** **  *        *     *     *    *              *      *
TTTtACACAATGTGGTTATCCTGCtTTaAtGCCcTTGTATGCaTGTATTCAaTCTAAGCAGGCTTTCACTTTCTCGCCAA
g  c  g  g     g        g  g a   t  a     c  c c   gg gcga        t  c  t      c
a     t                 c        a                 c  c
                        a                             a

      2090      2100      2110      2120      2130      2140      2150      2160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  *   *    **           * *       *  **  **             *      *  *  *    *   *
CTTACAAGGCCTTTCTGTGTAAACAATACCTGAACCTTTACCCCGTTGCcCGGCAACGGCCAGGTCTGTGCCAAGTGTTT
g  t   a     t aca c       ta  cc               ta        t t     a
c                           t                   a           c


      2170      2180      2190      2200      2210      2220      2230      2240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   **  *  * ***   *  * *         *  *                                *     *  **
GCTGACGCAACCCCCACTGGCTGGGGCTTGGTCATGGGCCATCAGCGCATGCGTGGAACCTTTctGGCTCCTCTGCCGAT
     t              t          ct  a                           tc       t a
                                                               ga
                                                               ag

      2250      2260      2270      2280      2290      2300      2310      2320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**    *  **        * ** ** **                   *           *  *  **  *
CCATACTGCGGAACTCCTAGCCGCTTGtTTTGCTCGCAGCAGGTCTGGAGCAAACATTcTCGGGACgGATAACTCTGTTG
                     a     c            c       g  g   c ca t     t  c     c  a
                                                       g          a        g


      2330      2340      2350      2360      2370      2380      2390      2400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  * *   *       **    *  ** ***      **      ***  *  *  *  *           *  *
TtCTCTCCCGCAAATATACATCgTtTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTT
c  t     t  g t   g  a ac              a   a                a                 c
    a                 c


      2410      2420      2430      2440      2450      2460      2470      2480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* ****            ****                           * **       **  *     *
TACGTCCCGTCGGCGCTGAATCCcGCGGACGACCCtTCTCGGGGcCGCTTGGGaCTCTcTCGTCCCCTTCTCCGTCTGCC
        c  a           t        t  g        t  tc a  gactga      t  ca at c
                       g           c           g     tg   t
                                                     c    g

      2490      2500      2510      2520      2530      2540      2550      2560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  *   *     **** *     ** *  **  *   **        **           *  * *          *
GTTtCGaCCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTG--CA
   c at  a                            c                             t
      c
      g

      2570      2580      2590      2600      2610
....:....|....:....|....:....|....:....|....:....|....:.
  *        *** *
CTTCGCT-TCACCTCTG---CAC---GTCGCATGGAGACC---------ACCGTGA
      g                       a     a   ac       --