HBVdb::Dataset - Hepatitis B Virus Database

Dataset for protein Pol of genotype C

[Download (right click)] [Download Frequencies (right click)] [Sequences] [Alignment]

        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
          :                         :.    .             .    .    **      .
MPLSYQHFRKLLLL--DD--EAGPLEEELPRLADEGLNRRVAEDLNLGNLNVSIPWTHKVGNFTGLYSSTVPVFNPeWQT
         r       n  d              d  h         dp                    a i  sd k
                 h                              t
                 e


        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* :*  .             .  .                .          .                   :      *
PSFPhIHLqEDIInRCQQyVGPLTVNEKRRLKLIMPARFYPNlTKYLPLDKGIKPYYPEHaVNHYFkTRHYLHTLWKAGI
    n   k    d  e f    ni      s       f kr                yi     qa
    d        t                            f                nt
    r                                     i                 v


       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
          .    .*                                                          .
LYKRETTRSASFCGSPYSWEQELQH-GRLVFQ--TStRHGDeSFCSQSSGILSRSPVGPcvRSQlKQSRLGLQPQQGSlA
       h                - -----k    k    kpvgak a  faqps  sgiq kfq     s     pm
                            sflh    e      lr              sfw



       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

rGKsGRSGsiRArVHpTTRr----SFGVEPSGSGHIDNSaS--------StSSCLHQSAVRKTAYSHLSTSKRQSSSGHA
sstp   ril tg  s p q    p    sad rrtn gtn        ca   iy    gea ha f  a  kp a rt
c la     f       s                pf  r          gs   h                  h
g q                                v             n


       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                      .        .                             * ..    .  :: .
VELhniPPSSARsQSeGPilSCWWLqFRNSKPCSDYCLtHIVNLLEDWGPCTEhGEHnIRIPRTPARVTGGVFLVDKNPH
m fqhfssn t pk k--lfp    k  dr     h  s li         a y   h
     l  g v    arsvp                                 n   s
               -  --                                     r
                   s

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   *.       .   *         * .. : * :   .   . . *  ..  *   .. : . :   . **
NTTESRLVVDFSQFSRGSThVSWPKFAVPNLQSLTNLLSSNLSWLSLDVSAAFYHiPLHPAAMPHLLVGSSGLPRYVARL
  a                r                        i          l           i  c  sg
                   q
                   k


       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
.                        .             :     .     : :  .    :    *
SSTSR--N-I----N----yQHGtMQDLHdSCSRNLYVSLLLLYKTFGRKLHLYSHPIILGFRKIPMGVGLSPFLLAQFT
  n    i f    d    hkyral n  nt  kh  d  m       q         vf               m
         n         nh        e    k                        m
         l


       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                       :                   :   * .    . .  .    :        .   . *
SAICSVVRRAFPHCLAFSYMDDVVLGAKSVQHLESLFTsiTNFLLSLGIHLNPNKTKRWGYSLNFMGYVIGsWGTLPQEH
      i            i        t     a y av    v        h         h       c  s   d
                   v                                 t



       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   :     .  .   .                .     .  .  *: :      *   .
IVlKiKQCFRKLPvNRPIDWKVCQRIVGLLGFAAPFTQCGYPALMPLYACIQsKQAFTFSPTYKAFLCKQYLnLYPVARQ
iq l h   q  i                              l   s  ha       s   t   q  mh
  h          t                                      t                   t



       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
. .   .    :   ..                           :                 :       *      . .
RsGLCQVFADATPTGWGLAiGHqRMRGTFVAPLPIHTAELLAACFARSRSGAkLIGTDNSVVLSRKYTSFPWLLGCAANW
p                 ma r l    m                      nil
a                 l  k                             t
                   v


       810       820       830       840       850       860       870
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:
:            : :    .       .            .                  :  *         *
ILRGTSFVYVPSALNPADDPSRGRLGLYRPLLrLPFRPTTGRTSLYAVSPSVPSHLPdRVHFASPLHV--AWrPP
                          i     h   q p        d  n   rp v              k
                                c                        g
                                l                        a
                                s