HBVdb

Dataset for nucleotide sequence P of genotype all

[Download (right click)] [Download Frequencies (right click)] [Sequences] [Alignment]

        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
ATGCCCCTATCTTATCAACACTTCCGGAaACTACTGTTGTTAG------A------C------G------A------c--
           c    c  g        g a gg    a                 g      a       cgagaca  
                                t                       t      c                
                                                                                
                                                                                

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
----G------------------AG---------G------C------A------G------GTCCCCTAGAAGAAGAAC
           ggaccg      gt                                      a     c     c    
                        c                                                       
                                                                                
                                                                                

       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
TCCCTCGCCTCGCAGACGAAGgTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGG------GaA---T---CtCAAT
      a      c    c  a        a         c        a      ca       ct   c    ct   
                                                                 g              
                                                                                
                                                                                

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
GTTAGTATtCCTTGGACtCATAAGGTGGGAAAcTTTACtGGGCTTTATTCtTCTACtGTaCCTgtCTTTAAtCCTgAaTG
    a   c  c     a  c        g  t  c  g  a  c  c  c   t gact   tgt  c  ct  acg  
           g     g                       t              a  c   ac          c t  
                                                           g    a            c  
                                                                                

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
GcAAACt---CCcTCtTTTCCTaAcATtCATTTacAggAgGAcATTaTtaAtAgaTGTcAaCAATtTGTgGGcCCtCTtA
 at   a     t  c     acgt  a  c  gagcc aa tc cgccgca ag  cg g  g ac  a  g  c  c 
 t    c     a  a     cg g  c        a      t g  ac c      a             t  a  a 
                        a           t            t                      a  g    
                                                                                

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
CaGTaAATGAaAAaaGgAGAtTaaAATTaATtATGCCTGCTAGgTTtTATCCtAaccttACcAAATATTTgCCctTaGAt
 taat  c  gttcc a  gc gc cc gg c     at c  a  c tc  c ctgac  t  g  cc a  ac g  c
 c cc       cg        t  g     a     c              a tgtg   g        t  ta    g
    g                                                  aac   a                 a
                                                                                

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
AAaGGcATtAAACCtTATTATCCaGAacAtgtAGTTAATCATTACTTCcAaACtaGaCAtTATTTACAtACTCTgTGGAA
  g  t  c     g  c  c  t  gt gccg   g       t  ta gg cc g  c     g  c  ct t     
     g  a     a        g  ta ca                      g                    a     
     a        c        c     at                      a                          
                                                                                

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
GGCgGGtATttTATATAAgAGaGAaaCtACaCgtAGCGCcTCATTTTGtGGGTCACCATATTCTTGGGAACAAGAgCTAC
a  t  cg cc       ac g  gt c  t ac  t  a     c tc  a     t     c         a t    
   a  g  a                 a  c        t                                        
      a                                                                         
                                                                                

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
AgCATGgga---ggttggtcttccaaacctc------gaaaaggcatgGGGacgAATCTTTCtgttccCAAtCCtCTGGG
 t ------   -------------------      --c--------  acaa  c ac  caccaga  c  c     
        g   ctacctcgaa agtca aa      tc-ggt   g            g  g  g        a     
             c  a  tg  g cg           gg                         a        g     
                    c                                                           

       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
ATTCTTtCCCGAtCAcCAGTTGGAcCCtGCaTTCagAGCcAActCaaacAATCCAGATTGGGACtTCAAcCCcaaCAAGG
   tc c  a gc  t   c    t  actg   gag  a  ta cgca g   c  c     tca   taagct   a 
      g                    g  c                g                        at      
                              t                                                 
                                                                                

       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
AccacTGGCCaGagGCcAAccAGGTaGGAG---tgGGAgCATTCGGGCcaGGgTTCACcCCaCCaCAcGGcgGt------
 tact   a gccct acgta    g       ct   tgc at  t tg  ac   tt  t  c  t  aaac      
   ga     tata   t g              a     t     a  t  t     a  c  g     g  a      
             t                                c              g  t     t         
                                                                                

       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
------cTtTTGGGGTGGAGCCCTCAGGCTCAGGGCaTatTgacaACagTGCCAg------------------------c
      a gc          t  g  a  a  a  tccgc acact tt at --c                     ag-
      g                a            g ta cg t  c      at                      at
      t                                  t     g                                
                                                                                

       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
AgctCCtCCTCCTGCCTCcACCAATCGgCAGTCAGGAAGgCAGCCTACtCCcaTcTCTCCACCTcTaAG------agACA
gaaa  g        a  tg       c g gtc  gc aa a  a  c  gc aa       gt g        ga a 
  tg  a        t           t   a             c     at g                         
                                                   tg t                         
                                                                                

      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
gTCATCCTCAGGCCATGCA-GTGGAAcTCCAcaaCaTTCCACCAAgCTCTg---CaaGAtCCCAGAGTgAGgGgcCTgTA
ca     a  a  agca   a     t  a gcgat  t  t  ga c  t   ttg  c  g ag  c-aa-ct--a--
 c     g                     t  tc c              a           a     ac-- --  -  
 g                                 g                                -        t  
                                                                             c  

      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
ttTtCCTGCTGGTGGCTCCAGTTCaGGAACAGTaAaCCCTGtTCcGAcTAcTGcCTCtccCATaTCGTCAATCTtcTCGA
cc-c              a     c aggt cag g     c  aa ac t  t   aga tcc  a    c  cagt  
--                              cc                       gtt                    
                                                                                
                                                                                

      1210      1220      1230      1240      1250      1260      1270      1280
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
gGAcTGGGGACCCTGcaccGAAcATGGAGAaCAtcaCATCAGGAtTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTT
a  t     g  t  tgat   t     agg  cag        c    c        t    c           t  g 
c               tt          c      t                                            
                                                                                
                                                                                

      1290      1300      1310      1320      1330      1340      1350      1360
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
TTCTTGTTGACAAgAATCCTCACAATACCaCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAaCacC
    c        a               ga                              g           aggtta 
                                                                          ct c  
                                                                           c    
                                                                                

      1370      1380      1390      1400      1410      1420      1430      1440
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
CgtGTGTCtTGGCCAAAATTcGCAGTCCCcAAcCTCCAaTCACTCACCAACCTctTGTCCTCCAAtTTGTCCTGGtTATC
 ac     c           t        a  t     g     t  t   t gc        g c         c    
  g     g                                                                  a    
  a                                                                             
                                                                                

      1450      1460      1470      1480      1490      1500      1510      1520
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                     *                                         *
GCTGGATGTGTCTGCGGCGTTTTATCATcTTCCTCTtCATCCTGCT---GCTATGCCTCATCTTCTTgTTGGTTCTTCTG
 t       a                  a     t g                              a         g  
                                                                                
                                                                                
                                                                                

      1530      1540      1550      1560      1570      1580      1590      1600
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
GAcTAtCAAGGTATGTTGCCCGTTTGTCCTCTAaTTCCAGG------At------CatCAA---Cc------------AC
  t gc  g              c        gc              a       ta g     t              
                                c                       c        a              
                                                                 g              
                                                                                

      1610      1620      1630      1640      1650      1660      1670      1680
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
------------CA------------GcACgGGACCaTGCAaaACCTGCACgAcTCCTGCTCAAGGaAcCTCTATGTtTC
            a              tgtc  g  c   cgg       tagtaat  t      c a    t   a  
                              a                      g                          
                                                                                
                                                                                

      1690      1700      1710      1720      1730      1740      1750      1760
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                    *           
CCTCaTGTTGCTGTACaAAACCTtCGGAcGGAAAtTGCACcTGTATTCCCATCCCATCATCtTGGGCTTTCGcAAaATtC
    t  c  t   t c     ca    ta    c     t                 g  c        a g  g  a 
    c                                                        a          t       
                                                                                
                                                                                

      1770      1780      1790      1800      1810      1820      1830      1840
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  *                                                                             
CTATGGGAGTGGGCCTCAGtCCGTTTCTCcTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCC
                   c         t                c  a              g  cc           
                             a                                                  
                                                                                
                                                                                

      1850      1860      1870      1880      1890      1900      1910      1920
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
CACTGTtTGGCTTTCAGtTATATGGATGATGTGGTaTTGGGGGCCAAGTCTGTACAaCATCTTGAgTCCCTTTtTaCCgC
  t   c       t  c   g t      c    tc       g  aa    g cg  c g   ag      a g  t 
                              a                                                 
                                                                                
                                                                                

      1930      1940      1950      1960      1970      1980      1990      2000
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                            * *                 
TgTTACCAATTTTCTTTTGTCTtTGGGTATACATTTaAAcCCtaAcAAAACaAAaaGaTGGGGcTAcTCccTtaAcTTcA
 a     c       gc a   c    c  c   c g  ta ccct     c  gc t     t  taatt ac t  t 
                      g                    t g     t     g     a        g       
                                                   g                    c       
                                                                                

      2010      2020      2030      2040      2050      2060      2070      2080
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                         *                                      
TGGGaTATgTaATTGGaaGTTggGGtaCaTTgCCaCAgGAaCAtATtgTACaaAAAaTCAAacaaTGTTTTaGaAAACTt
    t  ca c     gt c at  ct t  a  g  a  t  c  caggttg  gc g  ggtg  c  cc g   t g
    c     t     cg       g  c     c     c       a acc   t t   a c        t     c
    g           t        a  g     t     g           t         t t               
                                                                                

      2090      2100      2110      2120      2130      2140      2150      2160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
CCTgTaAAcaGgCCTATTGATTGGAAAGTaTGTCAaaGaATTGTGGGTCTTtTGGGcTTTGCtGCcCCtTTtACaCAATG
  cact  tc a  ag    c     g  c  c  gc t  a ca  c  gc a  g  c  c  t  a  c  g     
     c     t  c              g        c        a  c     t     g  a  c     t     
           c                 t        g        g        a                 c     
                                                                                

      2170      2180      2190      2200      2210      2220      2230      2240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
TGGtTAtCCtGCtTTaATGCCtTTaTATGCaTGTATaCAAgCtAAgCAGGCTTTcACTTTCTCGCCAACTTACAAGGCCT
   a  c  a  cc gca   cc g  ca c  c  tactt a ga  a     tgtc  t        c  t  aa t 
   c     c  a  c              g     c  ga g                          g          
   g        g                          c  c                                     
                                                                                

      2250      2260      2270      2280      2290      2300      2310      2320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
TTCTgtGTAAACAaTAtcTGAACCTTTACCCCGTTGCcCGGCAACGGcCaGGTCTgTGCCAAGTGTTTGCTGACGCAACC
 ct aaacccc  g  ca  cc               ta        t t  c  c                 t      
    cc           t                   g         g c     t                        
                                     a                 a                        
                                                                                

      2330      2340      2350      2360      2370      2380      2390      2400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
CCCACTGGcTGGGGCTTGGccATaGGCCATCagCGCATGCGTGGAACCTTTgTGgCTCCTCTGCCGATCCATA---CTGC
        t          ttt g c     gc   c a  c  g      cc t    gt a              c  
        a           ac t                           ta                        g  
                    g  c                           ag                           
                                                                                

      2410      2420      2430      2440      2450      2460      2470      2480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
GGAACTCCTAGCcGCTTGTTTTGCTCGCAGCcGGTCTGGaGCaAAacTtaTCGGgACtGAcAAcTCTGTtGTcCTcTCcC
         t  a  c  c  c         a       g  g cca cc t  a  c  t  t  c  c  g  t  ta
         g  t                                g     a  c  g        g     t     g 
            g                                t        t  a              a       
                                                                                

      2490      2500      2510      2520      2530      2540      2550      2560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
GgAAaTAtACaTCcTTTCCATGGCTGCTaGGcTGTgCTGCCAACTGGATCCTgCGCGGGACGTCCTTTGTtTACGTCCCG
 c  g  c  c  g ac           c  g   a             t  t  a  a           c        c
 a           a                 t                    a                           
             t                 a                                                
                                                                                

      2570      2580      2590      2600      2610      2620      2630      2640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
          *                                                                     
TCGGCGCTGAATCCcGCGGACGACCCcTCtCGGGGcCGcTTGGGaCTCTacCGtCCcCTTCTcCgtCTGccGTtcCggCC
  a           t        t  g  c  c  t  tc    ga g ct  c  g  c  ttac  att  at aa  
              a           t  g  a           cg t g      t     g     cg       t  
                          a                 t    t                           c  
                                                                                

      2650      2660      2670      2680      2690      2700      2710      2720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
GACCACGGGGCGCACCTCTCTTTACGCGGtCTCCCCGTCTGTGCCTTCTCATCTGCCGGaCCGTGT--GCACTTCGCT-T
at g     t                   a            t       g   a    t                    
                             c                             g                    
                                                           c                    
                                                                                

      2730      2740      2750      2760      2770       
....:....|....:....|....:....|....:....|....:....|....:..
                                                         
CACCTCTG---CAC---GTcGCAT------GGAgACCA---------CCGT---G-A
                   t            ca                    - -
                                                         
                                                         
                                                         
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