HBVdb

Dataset for nucleotide sequence P of genotype RF

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        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
ATGCCCCTATCtTATCAACACTTCCGGAaACTACTGTTGTTAGACGAc------G------A------G------G----
           c    c           g   tg    a     ga a        gaccg       t           
                                g                                               
                                                                                
                                                                                

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                 *     *            *   *         *            *   *            
--C------AG------GTCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAGgTCTCAATCGCCGCGTCGCAGAAG
                  a           c          a           c  a        a         c    
                                                                                
                                                                                
                                                                                

       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*       **       *    **         *       *  *  *  **        *        *          
ATCTCAATCTCGGGAATCtCAATGTTAGTATcCCTTGGACTCATAAGGTGGGAAAcTTTACtGGGCTTTATTCTTCTACt
    a      catgtc c        a   t  c     a  c        g  t  c  g  t     c  cg  t g
              c                a  g     g                    c  a        a     a
                                                                c               
                                                                                

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   **       *   *     *        *    ** **     *              *             **   
GTACCTgTCTTTAAtCCTgAgTGGcAAACtCCcTCtTTTCCTcAcATtCATTTaCAggAgGAcATTaTtaAtAgaTGTcA
acc   tg   c  ct gc t   a   ta  ta c     aa t  a  c  gagcc aa t  cg cgca ag  cg 
  t   a           a a        c  a  a     cg a           t         c ac c      a 
                    c        g              g           a                       
                                                                                

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    *  **  * **           * *      *     *     *  * * ***  *  * ** *  **        
ACAaTaTGTaGGcCCtCTtACAGTtAATGAaAAaAGgAGatTaaAATTaATTATGCCTGCTAGGTTcTATCCtAAccTTA
g  g tc   g  at c  ta c  c  g  cc ac gc gc cc gg c       a  t tc  a ctggc 
            t  c  g     a        g           g     a                  c  gtc  
            a  g        g                                                  aaa  
                                                                                

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  *  **     *     *  * **    **     * *  **           **   * *** **     *    *  
CcAAATATTTgCCcTTgGAcAAaGGcATtAAACCtTATTATCCtGAacATgcAGTTAATCATTACTTCcAaACtaGgCAt
 t  g  c  a  ac a   g  t  c     g  c     a  gt gct               ta gg cc a  c
 a           t           g        a        c  ta ca                      g      
                         a        c        g                                    
                                                                                

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*** *           **          *  * **       *      *           *    *  **        *
TATTTACAtACTCTgTGGAAgGCtGGcATtcTATATAAGAGAGAAaCtACACgcAGCGCCTCATTTTGTGGGTCACCATA
     g  c  ct a   c a  g  tg at       a  g tgt at t at  t  t     c ac        t  
              t        a  g                  c  c  a     a                    
                                                                                
                                                                                

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     *  * *       **                                                *           
TTCTTGGGAACAAGAgCTACAGCATgggaggttggtcttccaaacctcgacaaggcatGGGGacgAATCTTTCtgttccC
 a           a t     t -----------------------------------    caa  c ag  caccaga
                            gct cctagaa agtc    tga c a tg            c     a   
                                     g  g        c                              
                                     c                                          

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  *         *  *       *  **    *  *      *    *  *   *       *  ** ** *     * 
AATCCTCTGGGATTCTTTCCCGAtCAcCAGTTGGAcCCtGCgTTCggAGCcAACtCaaacAATCCaGATTGGGACtTCAA
  c  c        tc c    gc  t        t  a  c   aa   a  ta cgca  c  c         c    
                                      g  a                g                     
                                         t                                      
                                                                                

       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                * *                        *         *             **    *      
cCCcAACAAGGAtcacTGGCCaGAgGCaAAtcAGGTaGGAGcgGGAGCATTCGGGCcaGGgTTCACcCCaCCaCAcGGaG
t  gcta     cact     gccc  cc ca    g  g tt   t c at  attg  tc    t  t  g  t  ca
   a           a      a a                 a                 a        c  c     g 
                        t                                            g  t       
                                                                                

       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   *  *  *                *                                                     
GtCTtTTGGGGTGGAGCCCTCAGGCTCAGGGCATAtTgacAACagTGCCAGca---------------------gcaCCt
acg gc             g  a  c  a   ccgc acacgatt a  -at-                 a caaat  g
 a                                 a c   c c      --                       tg  a
                                           g                                    
                                                                                

       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                     * ** **          **  *             **      
CCTCCTGCCTCcaCCAATCGgCAGTCAGGAAGaCAGCCTACtCCcaTcTCTCCACCTcTaAGAgACAgTCATCCTCAGGC
        ag tg       c   at   gc ga a  c  c  gc ga a     at gc gac  cg        a  
        t  a        t   g             a     at a                    c           
                                      g        t                                
                                                                                

       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
        *                                                          *  * ***  *  
CATGCAGTGGAAcTCCACaACcTTCCACCAAaCTCTgCaAGAtCCCAGaGTgAGgGgCCTgTAttTtCCTGCTGGTGGCT
 g a       ct  t gcgaa  t tt   g    tttg  c  a aga c aa ct  a--cc-c             
               a  t  t              a              a        t  --               
                     g                                      -                   
                                                                                

      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                   ** *   *  *     *                    *          ** **     *  
CCAGTTCaGGAACAGTaAACCCTGtTCcGAcTACTGcCTCtCcCaTATCGTCAATCTTcTCGAgGAcTGGGGACCCTGca
 a     c cggt acg g     c  aa ac t  t   aga tcc ta       caa   a  t        t  tg
              c c                        t                 g   c                
                                                                                
                                                                                

      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
      ***   *  *     *       **      * *             ** **       ** *    *     *
CcGAACATGGAGAaCAtcaCATCAGGAtTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAgAAT
at   t        cag    c   c    c        t    ca          ta       c        a   
ga                t                                                             
                                                                                
                                                                                

      1210      1220      1230      1240      1250      1260      1270      1280
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *** *  *  *                 *  *   ****  *  ** *      *          *** * *  **  *
CCTCACAATACCgCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAaCacCCgtGTGTCtTGGCCAAA
            aa                              g           aggtta  ac     c        
                                                          t c    g     g        
                                                            g                   
                                                                                

      1290      1300      1310      1320      1330      1340      1350      1360
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 ** ****  **  * * **   * **  * **  *  * *         **    ** * **    *   *    **  
ATTCGCAGTCCCcAACCTCCAATCACTCACCAACCTCcTGTCCTCCAAcTTGTCCTGGtTATCGCTGGATGTGTCTGCGG
   t         t     g            t gt       ag tc        c     t       a       
                                                          a                     
                                                                                
                                                                                

      1370      1380      1390      1400      1410      1420      1430      1440
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   * * * **   *     *  *  *      *****   **  ** *  *  *    *** *     * **      *
CGTTTTATCATaTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTAtCAAGGTATGTTGCC
           c       g                           a         g    t gc  g           
                                                                                
                                                                                
                                                                                

      1450      1460      1470      1480      1490      1500      1510      1520
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *   * *        *         * *           *   * **       ***        **            
CGTTTGTCCTCTAaTTCCAGGAtCaTCaACcACCAGCACgGGACCaTGCAgaACCTGCACgAcTCCTGCTCAAGGAACCT
   g        cc        a ta g  tg a  tgtc  ga c   cag       ta taa   t  g a c a  
            g           c     a        a     t                 c                
                        g     g                                                 
                                                                                

      1530      1540      1550      1560      1570      1580      1590      1600
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *      * **  *  *  * *   * **     *          * * ******* ******        ***  *  
CTATGTtTCCCTCcTGTTGCTGTACaAAACCTtCGGAcGGAAAcTGCACcTGTATTCCCATCCCATCATCcTGGGCTTTC
      a      t  c  t    tc      at   t     t     t                 g  t         
             a                                                        a         
                                                                                
                                                                                

      1610      1620      1630      1640      1650      1660      1670      1680
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  **     * ** *     *  *  ** ** *****     * **      *    ** * *   *  *     *  **
GcAAaATtCCTATGGGAGTGGGCCTCAGtCCGTTTCTCcTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGG
 g  g  a                 t  c         t          c     c                      
 t                                    a                                         
                                                                                
                                                                                

      1690      1700      1710      1720      1730      1740      1750      1760
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    ****    **  ***   *     *    **  *  * *     **                 * *  **      
GCTTTCCCCCACTGTtTGGCTTTCAGTTATATGGATGATGTGGTATTGGGGGCCAAGTCTGTACAaCATCTTGAGTCCCT
           t   c       t  c   g t      c    tc       g  aa    g cg  c   ag    
                                       a                                        
                                                                                
                                                                                

      1770      1780      1790      1800      1810      1820      1830      1840
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
              *   **        * * ****    *   *     *       **         ***  *     
TTtTACCgCTgTTACCAATTTTCTTTTGTCTTTGGGTATACATTTaAACCCTaAtAAAACcAAacGaTGGGGcTAcTCcC
  a g  t  a      c      gg     c           c g  ta cc c  g  a  ga t      t  tt
                                                 t a        t     g           
                                                            g                   
                                                                                

      1850      1860      1870      1880      1890      1900      1910      1920
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
        *   * **    ** *         *       ** *     *           **             ** 
TtaAcTTcATGGGaTATgTaATTGGaaGTTggGGtaCtTTaCCaCAgGAaCAtATtgTACaaAAAaTCAAacAaTGTTTT
 ac t  t     c  ca c     gt c at  gtgac g  g  atct  c  cagcttc  gc t gggtc  c  c
 g           t     g     tg       a  c     c   a c       ag  g     g   a g      
 c           g           c        c              g           t           t      
                                                                                

      1930      1940      1950      1960      1970      1980      1990      2000
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
       * **        * *   * *  ***       * *      *    *           ** *     ** **
aGaAAAcTgCCTGTaAAtAGaCCTATTGATTGGAAAGTaTGTCAaaGaATTGTGGGTCTTtTGGGcTTTGCtGCcCCtTT
c g   t t  ca tc cc g  cg c        g  c  c  gc g  ctca  c  cc a  t  c  c  t  a  
  c     c     c        a              g        t        a  g     g        a  c  
        a                                      c        g        a              
                                                                                

      2010      2020      2030      2040      2050      2060      2070      2080
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    *  ** ** *  ** **  *    **  * *   *     *             ** **       *        *
tACaCAATGTGGtTATCCTGCtTTaATGCCtTTaTATGCATGTATaCAAtCtAAgCAGGCTTTcACTTTCTCGCCAACTT
c  g        a  c  a  cc gca    g     c     t  gg cc a  a     t  a  t   t      
   t        c                                 c  a              c             
   c        g                                 t  g              g             
                                                                                

      2090      2100      2110      2120      2130      2140      2150      2160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*                   *  **       **                                              
ACAAGGCCTTTCTgtGTAAACAaTAtcTGAACCTTTACCCCGTTGCcCGGCAACGGtCaGGTCTcTGCCAAGTGTTTGCT
 t  aatt  ct aaacc c  g  cac cc               ta        c t     g               
             cc           t                             g c     t               
                                                                a               
                                                                                

      2170      2180      2190      2200      2210      2220      2230      2240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
       * * *      *** *                             *     *      **         ****
GAcGCAACCCCCACTGGcTGGGGCTTGGccATaGGCCATCagCGCATGCGTGGAACCTTTgtGgCTCCTCTGCCGATCCA
  t              a          ttg g     c gc   c    g         ca t    gt a        
                 t           at t                 c         tc      a           
                                c                           a                   
                                                                                

      2250      2260      2270      2280      2290      2300      2310      2320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *               *    **    *       *  *    *           *  *  * ** **        *  
TACTGCGGAACTCCTAGCaGCTTGTTTTGCTCGCAGCcGGTCTGGaGCaAAacTtaTCGGgACtGAcAAcTCTGTtGTcC
   c        g  g  c  c     c               g  g cca cc   c  t  t  c  c  
            t  t  t                                gg        g           g  
                                                                              
                                                                                

      2330      2340      2350      2360      2370      2380      2390      2400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
               *  * *  ** * *  *   *         *    ***    *  *                   
TcTCtCGgAAaTAcACcTCcTTTCCATGGCTGCTaGGcTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTcTAC
 tg c  c  g  t   g ac           c  g   a             t   a  a           t   
    g  a           a                 t                                        
    a  t           t                 a                                          
                                                                                

      2410      2420      2430      2440      2450      2460      2470      2480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 * *            * ** ** *  *  *  *   *                      *   *             * 
GTCCCGTCGGCGCTGAATCCcGCGGACGACCCgTCTCGGGGcCGtTTGGGacTCTacCGTCCcCTTCTtcgtCTGCCGTT
     c  at a        t           t  c  c  t  cc    gact ct  c  t  c  ctac  atta a
                    a           c  g              t  g g      g     g t         
                                a                 c    t              c         
                                                                                

      2490      2500      2510      2520      2530      2540      2550      2560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *            *                *  *  ** *     *  **           **         *   *  
CCGgCCGACCACGGGGCGCACCTCTCTTTACGCGGtCTCCCCGTCTGTGCCTTCTCATCTGCCGGaCCGTGTGCACTTCG
t aa  at  t       a                       t           g        t              
   c   c                                  g                    g              
   t                                                             c              
                                                                                

      2570      2580      2590     
....:....|....:....|....:....|....:
   *  **                           
CTTCACCTCTGCACGTCGCATGGAgACCACCGTGA
                ta     ca   g  a   
                                   
                                   
                                   
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