HBVdb

Dataset for nucleotide sequence P of genotype H

[Download (right click)] [Download Frequencies (right click)] [Sequences] [Alignment]

        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
************* ** **  **** ***  *  **** ******  *********** ****** **************
ATGCCCCTATCCTATCAACACTTCCGGAGACTACTGTTgTTAGACAACGAGGCAGGGCCCCTAGAAGAAGAACTCCCTCG
             r  c  ga    t   tg tg    a      cc           t      g              
             g                                                                  
                                                                                

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
****************** **** ********* ********* ******* ***** * ********* ** *******
CCTCGCAGACGAAGATCTCAATCaCCGCGTCGCAGAAGATCTCAATCTCCAGCTTCCCAATGTTAGTATTCCTTGGACTC
                  a    t         c         c       t     a g         c  g       
                       g                                                        
                                                                                

       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
************* ********** ****** ******  ******* * ******** *** ******* *********
ATAAGGTGGGAAACTTTACCGGTCTTTACTCCTCTACTgTACCTGTTTTCAATCCTGACTGGTTAACTCCTTCTTTTCCT
             t          w      t      ac       a t        t   c       c         
                                                                              
                                                                                

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *******  * ********* ******* ******** ********  ************  ******  **** ****
GACATTCACTTGCATCAAGATcTGATACAAAAATGTGAACAATTTGTaGGCCCACTCACTAcAAATGAAAGGAGACGATT
a       tc a         t       g        g        gc            ac      gt    a    
                                                                     ca         
                                                                                

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**** * *** ******* ** *************  ** ***** ** ******************** ** ** ****
GAAAcTaATTATGCCAGCTAGGTTTTATCCCAAAGtTACtAAATAcTTCCCTTTGGATAAAGGTATTAAgCCtTACTATC
    t g   w       a  a             ga  c     t  t                    a  a  t    
    a                                                                 g       
                                                                        c       

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
***** ******** ********** *** * * *** ***** ****** *********** **** ****** *****
CAGAGAATGTGGTTAATCATTACTTtAAAACTAGACAtTATTTACATACTTTGTGGAAGGCAGGAATTCTATATAAGAGA
     c        g          c   g g c   c     g      c           a    c      m     
                                 a                                              
                                                                                

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
******************************************* ********* ************* ********** *
GAATCCACACATAGCGCCTCATTTTGTGGGTCACCATATTCCTGGGAACAAGAGCTACAGCATGGGAGCACCTCTCTCaA
                                           k         a             t          c 
                                                                                
                                                                                

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**** ******** *********** ** ***************************** *************** *****
CGGCGAGAAGGGGCATGGGACAGAAtCTTTCTGTGCCCAATCCTCTGGGATTCTTTCCAGACCACCAGTTGGATCCACTA
    r        y           c  c                             m               v     
                         y                                g                     
                                                                                

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
******** ***************** ************ ** ************** ***  **************** 
TTCAGAGCAAATTCCAGCAGTCCCGATTGGGACTTCAACACAAACAAGGACAATTGGCCAATGGCAAACAAGGTAGGAGT
        c                 c            g  g              g   ca                c
                                                                                
                                                                                

       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
***** *** ***** ***** *********** ***** ******************** ***** ******** ****
GGGAGGCTTCGGTCCAGGGTTCACACCCCCACACGGTGGCCTTCTGGGGTGGAGCCCTCAGGCACAGGGCATTCTgACAA
     c   t     c     t           t     g                    a     r        a    
                                                                                
                                                                                

       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*** ****** ***** ***** ******* ** ***************  * ********* ***** ********** 
CCTcGCCACCAGATCCACCTCCTGCTTCCACCAATCGGAGGTCAGGAAGAAAGCCAACCCCAGTCTCTCCACCTCTAAGG
   t      c     w     c       a  c               gm a         a     t          a
                                                  c                             
                                                                                

       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 * ***********                     *  *  *   **  *** * * **  ******* *****      
GACACACATCCACAGGCCATGCAGTGGAACTCAACACAGTTCCACCAAGCACTGTTGGATCCGAGAGTAAGGGGtCTGTA
c g           nnnygnnnnnnnnnnnnnnct ag ca aca  tc   a c a  ct       g     g-----
                 nn                                                 c          g
                 m                                                              

       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    ********************* ******* * ** **  ********** ******* **** **** ********
TtTTCCTGCTGGTGGCTCCAGTTCAGAAACACAGAACCCTGCTCCGACTATTGCCTCTCTCACATCATCAATCTTCTCGA
-c--                     a       a g  y  tg          t       g    g    c        
 -                                                                              
                                                                                

      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 **************   ******************************** ********* *********** ***** *
AGACTGGGGACCCTGcTATGAACATGGAGAACATCACATCAGGACTCCTAGGACCCCTTCTCGTGTTACAGGCGGTGTGT
m              tyc                                a         c           g     t 
                                                                                
                                                                                

      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**** ********** *** **********  ************************************** *********
TTCTTGTTGACAAAAATCCTCACAATACCAcAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGTACCACC
    c          g   g          ag                                      a         
                                                                                
                                                                                

      1210      1220      1230      1240      1250      1260      1270      1280
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
********************************************************************************
CGGGTGTCCTGGCCAAAATTCGCAGTCCCCAATCTCCAATCACTTACCAACCTCCTGTCCTCCAACTTGTCCTGGCTATC
                                                                                
                                                                                
                                                                                

      1290      1300      1310      1320      1330      1340      1350      1360
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
** *************************************** ******* ****   *   ***   **   *******
GTTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGAC
  c                                       g       g    tca cgt   cct  gtg       
                                                                                
                                                                                

      1370      1380      1390      1400      1410      1420      1430      1440
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*****************************************  **************** ******** ***********
TATCAAGGTATGTTGCCCGTGTGTCCTCTACTTCCAGGATCTACAACCACCAGCACGGGACCCTGCAAAACCTGCACCAC
                                         at                t        g           
                                         wc                                     
                                                                                

      1450      1460      1470      1480      1490      1500      1510      1520
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 * ********** ******** ******* ** ** ****  *************************************
TCTTGCTCAAGGAACCTCTATGTTTCCCTCCTGCTGCTGTACCAAACCTTCGGACGGAAATTGCACCTGTATTCCCATCC
g y          c        c       t  t  t    ta                                     
                                                                                
                                                                                

      1530      1540      1550      1560      1570      1580      1590      1600
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**** ***************************** ******************** **************** ** ****
CATCATCTTGGGCTTTCGGAAAATACCTATGGGAGTGGGCCTCAGCCCGTTTCTCTTGGCTCAGTTTACTAGTGCAATTT
    g                             t                    a                c  c    
                                  c                                             
                                                                                

      1610      1620      1630      1640      1650      1660      1670      1680
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* *************** ************** *******  * *** ******** ********************** 
GtTCAGTGGTGCGTAGGGCTTTCCCCCACTGTCTGGCTTTTAGTTATATGGATGATtTGGTATTGGGGGCCAAATCTGTG
 c               a              t       cg c   g        c                      a
                                                        g                       
                                                                                

      1690      1700      1710      1720      1730      1740      1750      1760
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
** ********* ** ********************************************** *** ** **********
CAGCATCTTGAGTCCCTTTATACCGCTGTTACCAATTTTTTGTTATCTGTGGGCATCCATTTgAACACAGCTAAAACAAA
  a         g  a                                              a   g  t          
                                                              r                 
                                                                                

      1770      1780      1790      1800      1810      1820      1830      1840
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* ******* *** ** * ***************   ******** ******** *********************** *
AtGGTGGGGTTATtCCtTaCACTTTATGGGTTATAtaATTGGGAGTTGGGGGACcTTGCCTCAGGAACATATTGTGCATA
 a       c   a  c t               ggc        c        a                       a 
 w                                                    s                         
 c                                                    g                         

      1850      1860      1870      1880      1890      1900      1910      1920
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
******** * ****** ********** ** *** **** *********** ** ********  **************
AAATCAAAGATTGCTTTCGCAAACTTCCCGTgAATAGACCCATTGATTGGAAGGTTTGTCAACGcATTGTGGGTCTTTTG
        a g      y          t  t   c    t           a  c        ac              
                               r                                                
                               a                                                

      1930      1940      1950      1960      1970      1980      1990      2000
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
***************** ******** ***** ***************** ***** ** **  * ***** ********
GGCTTTGCAGCCCCTTTTACTCAATGTGGTTATCCTGCTCTCATGCCCTTGTATGCCTGTATTACcGCTAAGCAGGCTTT
                 c        c     c                 a     t  c  cr t     a        
                                                                       c        
                                                                                

      2010      2020      2030      2040      2050      2060      2070      2080
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
******************************  ** * ****** *** *****  ***************** ** ****
TGTTTTCTCGCCAACTTACAAGGCCTTTCTCTGTAAACAATACaTGAACCTTTACCCCGTTGCTCGGCAACGGCCAGGCC
                              ac  c c      c   c     rm                 a  g    
                                                                              
                                                                                

      2090      2100      2110      2120      2130      2140      2150      2160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
********************************************** *************** ******* ******  *
TTTGCCAAGTGTTTGCTGACGCAACCCCCACTGGCTGGGGCTTGGCGATTGGCCATCAGCGCATGCGCGGAACCTTTGtG
                                              a               c       c      ta 
                                                                              c 
                                                                                

      2170      2180      2190      2200      2210      2220      2230      2240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
***** ***** *********** ******** ** ** *************** ************** ******* **
GCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCaGCtTGTTTCGCTCGCAGCaGGTCTGGAGCGGACaTTATCGGCAC
     g     c           a        t  c  c               c              g       a  
                                c                                    r          
                                                                                

      2250      2260      2270      2280      2290      2300      2310      2320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 ******** ******** ****************************** * ** *************************
TGACAACTCcGTTGTCCTTTCTCGGAAGTACACCTCCTTCCCATGGCTGCTaGGcTGTGCTGCCAACTGGATCCTGCGCG
c        t        g                              a c  t                         
                                                      a                         
                                                                                

      2330      2340      2350      2360      2370      2380      2390      2400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
************* **************** ************************ *****  ******* * ****** 
GGACGTCCTTTGTCTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCCTCTCGTGGTCGCTTGGGGCTCTgCCGCCCt
             t                a                        g     tc       a a      c
                                                                                
                                                                                

      2410      2420      2430      2440      2450      2460      2470      2480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
***********  **********  * ** ** ************************** **********  **** ***
CTTCTCCGCCTgcCGTTCCGGCCGACGACGGGTCGCACCTCTCTTTACGCGGACTCCCCGCCTGTGCCTTCTCATCTGCC
           at          at a  a  g                          a          ta    g   
           tg                                                               a   
                                                                              

      2490      2500      2510      2520      2530  
....:....|....:....|....:....|....:....|....:....|..
** ************** **************** *****  *** ******
GGCCCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGA
  a              g                a     ga   m      
                                           c      
                                                    
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