HBVdb

Dataset for nucleotide sequence PreS1 of genotype D

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        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                     * **    **  *  * **  *  * *    **  *  *    
ATGGGG------------CAGAATCTTTCCACCAGCAATCCTCTGGGATTCTTTCCCGACCACCAGTTGGATCCAGCCTT
      c           -       g                               t        c        
                          c                                                     
                                                                                

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                   *  *  *****   * *  *        *    * *            *     **    *
CAGAGCAAACACcGCAAATCCAGATTGGGACTTCAATCCCAACAAGGACACCTGGCCAGACGCCAACAAGGTAGGAGCTG
  a      tt aaac  c           t                  c t      a t              g  g 
            t g                                    a                       c  c 
                                                                                

       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  *                                                                            
GAGCATTCGGGCTGGGaTTCACCCCACCgCACGGAGGCCTTTTGGGGTGGAGCCCTCAGGCTCAGGGCATAcTACAAACc
    c a   a ca  tc       g  a        t  g  a  a        g  a     a    cga g  c  t
                g           t                                          t        
                                                                                

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
TTGCCAgCAAATCCGCCTCCTGCcTCtACCAATCGCCAGTCAGGAAGGCAGCCTACCCCgCTGTCTCCACCTTTGAGAaA
g     aa      a       tag c        t gaa ga gc a  a  c  t  t   a    g  gc  c  g 
c      t               t           a                 g  a  a                    
                                                                                

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
CACTCATCCTCAGGCCATGCAGTGGAAcTCCACAACCTTCCACCAAACTCTGCAAGATCCCAGaGTGAGAGGCCTGTATT
t  g  c     a  a  a        t aa a  at  t  t   g gt a          ag    ag     a   c
   c                                a                                t          
   a                                                                            

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    *  **                          * ** *   *     *                   *      *  
TCCCTGCTGGTGGCTCCAGTTCAGGAACAGTAAACCCTGTTCCGACTACTGcCTCTCcCaTATCGTCAATCTTCTCGAGG
ct                    c agg   cg g        t   c    ta    a tc  ta             
                               c                                                
                                                                                

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*        * **        ***           *                   *            **  *    *  
ATTGGGGACCcTGCGCTGAACATGGAGAACATCACATCAGGATTCCTAGGACCCCTgCTCGTGTTACAGGCGGGGTTTTT
          t  tatc   t     a               c             t                      c
               aa                                       a                       
                                                                                

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   *   * *     * *                 *   **  * *  **   *  *      *     **         
CTTGTTGACAAGAATCCTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGaACtACCG
           a               aa                              g           ag ac    
                                                                        c  g    
                                                                                

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
       **    *   *  *  *  *            * **   * * *   *  ***           *  * **  
TGTGTCTTGGCCAAAATTCGCAGTCCCCAACCTCCAATCACTCACCAACCTCCTGTCCTCCAACTTGTCCTGGTTATCGC
      g                                             t        g           a     t
                                                                                
                                                                                

       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     *      * *        **     *  * *  *  *     *****  * *   *  * *  *      *    
TGGATGTGTCTGCGGCGTTTTATCATcTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTA
       a           c      a          c      t          c                        
                                                                                
                                                                                

       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     *         ***    **                       *    *                       *   
TCAAGGTATGTTGCCCGTtTGTCCTCTAATTCCAG------GATCtTCAACcAC---------CAGCacGGGACCATGCa
  gg              c      a gc                c  g  t               gt    a c   c
   c              g                          a     a                     t      
                                             g                                  

       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
      * *  *                 *                 **  *    **            **    *** 
GAACCTGCACGACTcCTGcTCAAGGAACCTCTATGTATCCCTCCTGTTGCTGTACCAAACCTTCGGACGGAAATTGCACC
ag  t     taat  t      cg         t      a  c     ta     c t   ta    c     a
                                           t                                    
                                                                                

       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  ** ** * **** ** ** **    *  * **  *  * * **   ***        **  *     *     *    
TGTATTCCCATCCCATCATCcTGGGCTTTCGGAAAATTCCTATGGGAGTGGGCCTCAGCCCGTTTCTCCTGGCTCAGTTT
                    t          c              c        t            a           
                    a                                               t           
                                                                                

      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
       *  *  *  *                *  *         **    *     *    ** *          ***
ACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTTTGGCTTTCAGTTATATGGATGATGTGGTATTGGG
         c                c              t   c       t      g t           g     
                                                              c                 
                                                                                

      1130      1140      1150      1160      1170      1180      1190       
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:..
  * *              *         *           *    *  *   *                      *
GGCCAAGTCTGTACAgCATCTTGAGTCCCTTTTTACCGCTGTTACCAATTTTCTTTTGTCTTTGGGTATACATTTAA
      aa   cttca  c     ag      a   t                  a     c    cg     c g 
            g  c                                       c     g               
                                                                             
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