HBVdb

Dataset for nucleotide sequence P of genotype D

[Download (right click)] [Download Frequencies (right click)] [Sequences] [Alignment]

        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
****      *    *      **  *       * *                                           
ATGCCCCTATCtTATCAACACTTCCGGAgACTACTGTTgTTAGACGACGAGGCAGGTCCCCTAGAAGAAGAACTCCCTCG
           c       g        a t tg    a     ga a  c     a        g             a
                                g                       c                       
                                                                                

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                *           **  
CCTCGCAGACGAAGgTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAAt---CTCAATGTTAGTATTCCTTGGA
              a   a              c     a  a     a   gcc    ca c     a   c  c    
                                                                                
                                                                                

       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  *  *  *   *          **  * **  *                   *   *     **               
CTCATAAGGTGGGaAAcTTTACgGGGCTTTATTCTTCTACTGTaCCTGTCTTTAAcCCTCATTGGAAAACA---CCcTCT
 g  c  a     g gt     t   c   c  ct  act   a       t  aa c              aa  
             t        a                    g                                t   
                                                                                

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 * *     ** *   *              *       **                   **  *              *
TTTCCTAATATACATTTACACCAAGACATtATCAAAAAATGTGAACAaTTTGTAGGcCCACTcACAGTcAATGAgAAAaG
     c  c  t  cc g  t   a t  c  tg c g         g  c     t  g   ta t     a   c 
        g                          g                       t        a           
                                                                    g           

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     *            **           *  *        ** **  * **  *           * **     *  
AAGAcTGCAATTgATTATGCCTGCTAGGTTTTATCCAAAtGTTACCAAATATTTgCCATTgGATAAGGGTATTAAACCTT
   gt aa    a  c        c  a  c  c  t  gtcc  t         c  a  c     c  c     
                                       aag               t                      
                                       c                                        

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  ** *      *    *           *              *      *     * **  *    **     * *  
ATTATCCAGAACATcTAGTTAATCATTACTTCCAAACcAGACAtTATTTACACACTCTATGGAAGGCGGGTaTATTATAT
 c  c  g     ct g   g          t   g t     c        t ta  t        a   g t      
              g                      a                    g              c      
              a                                                                 

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
AAGAGAGAAACAACACaTAGCGCCTCATTTTGTGGGTCACCATATTCTTGGGAACAAgAgCTACAGCATGGGGCA-----
         t t  t g      t     c     a   t     a           a ta   gt         g    
                                                                                
                                                                                

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                 *    * *  *    **  *  * **     * *    **  ** *  *    *         
-------GAATCTTTCCACCAGCAATCCTCTGGGATTCTTTCCCGACCACCAGTTGGATCCAGCCTTCAGAGCAAACACc
       -     g                             g  t  t        c          a   g  tt a
             c                                                                 t
                                                                                

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
         *  *****   * *  *    *          *      *     **    *                   
GCAAATCCAGATTGGGACTTCAATCCCAACAAGGACACCTGGCCAGACGCCAACAAGGTAGGAGCTGGAGCATTCGGGCT
aac  c           t                  c t      a t              g  g     c     a c
 g                                    a                          c              
                                                                                

       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
GGGaTTCACCCCACCgCACGGAGGCCTTTTGGGGTGGAGCCCTCAGGCTCAGGGCATAcTACAAACcTTGCCAgCAAATC
a  tc    a  g  a        t  g  a  a        g  a     a    cga g  c  tg     aa g   
   g           t                                          t        c            
                                                                                

       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                    *                                           
CGCCTCCTGCcTCtACCAATCGCCAGTCAGGAAGGCAGCCTACCCCgCTGTCTCCACCTTTGAGAaACACTCATCCTCAG
 a       tag c    g   t gaa ga gc a  a  c  t  t   a    g  gc  c  g t  g  c     a
          t           a        c        g  a  a                       c         
                                                                      a         

       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                       *  **    
GCCATGCAGTGGAAcTCCACAACCTTCCACCAAACTCTGCAAGATCCCAGaGTGAGAGGCCTGTATTTCCCTGCTGGTGG
  a  a        t aa ag at  t  t   g gt a         -ag----ag---------c-t           
                       a                         --    --         -             
                                                        t                       

       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                      *  *     *                         *      *           * **
CTCCAGTTCAGGAACAGTAAACCCTGTTCCGACTACTGcCTCTCcCaTATCGTCAATCTTCTCGAGGATTGGGGACCcTG
   a c   c agg   cg          t   c    ta    a tc  t              a  c        t  
                  c                                                             
                                                                                

      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
        ***           *                 * *          * ** **    *     *   * *   
CGCTGAACATGGAGAACATCACATCAGGATTCCTAGGACCCCTgCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGA
tatc         a               c             t                      c           a 
  aa                                                                            
                                                                                

      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  * *                 *   **  * *  ***     *            **                 *    
ATCCTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGaACtACCGTGTGTCTTGGCCA
              aa                              g           ag ac          g      
                                                           c  g                 
                                                                                

      1210      1220      1230      1240      1250      1260      1270      1280
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*     **              *     **   *       *  *            **  *                  
AAATTCGCAGTCCCCAACCTCCAATCACTCACCAACCTCCTGTCCTCCAACTTGTCCTGGTTATCGCTGGATGTGTCTGC
                                       t        g           a     t       a     
                                                                                
                                                                                

      1290      1300      1310      1320      1330      1340      1350      1360
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                   **       *     ** **  * *   *             **         *  *    
GGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTG
      c      a          c      t          c                        c gg         
                                                                      c         
                                                                                

      1370      1380      1390      1400      1410      1420      1430      1440
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   **    **                             *                      *        ** *  * 
CCCGTtTGTCCTCTAATTCCAGG------ATCtTCAACcACCAG---------CacGGGACCATGCaGAACCTGCAcGAC
     c     aa gc                c  g  t               gt    t c   cag  t     t
     g                          a     a                     a                   
                                g                                               

      1450      1460      1470      1480      1490      1500      1510      1520
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
       *        *                 **  *    ***            ** * ***  *** *  * ***
TcCTGcTCAAGGAACCTCTATGTATCCCTCCTGTTGCTGTACCAAACCTTCGGACGGAAATTGCACCTGTATTCCCATCC
 at  t      c          t      a  c     ta     c t   ta    c                 
                              t                                                 
                                                                                

      1530      1540      1550      1560      1570      1580      1590      1600
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* **  * **    ** *  *  *  * *  *   **      ** *   *     *     *     *     *  *  
CATCATCcTGGGCTTTCGGAAAATTCCTATGGGAGTGGGCCTCAGCCCGTTTCTCCTGGCTCAGTTTACTAGTGCCATTT
       t                       c        t            a                    c   
       a                                               t                        
                                                                                

      1610      1620      1630      1640      1650      1660      1670      1680
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  **  *            *  *     *    *    *     *    ** *     *    ***  *          
GTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTTTGGCTTTCAGTTATATGGATGATGTGGTATTGGGGGCCAAGTCTGTA
             c              t   c       t      g t           g           aa   ct
                                                 c                             g
                                                                                

      1690      1700      1710      1720      1730      1740      1750      1760
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
      *      *  *           *    *  **  *     *  *     *        *       *  *    
CAgCATCTTGAGTCCCTTTTTACCGCTGTTACCAATTTTCTTTTGTCTTTGGGTATACATTTAAACCCTAACAAAACaAA
tca  c     ag      a                      a c   c    cg     c g  t  ccct  g  t  
  c                                       c     g                            g  
                                                                             c  

      1770      1780      1790      1800      1810      1820      1830      1840
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    *** *        *  * *    * *        *          **  *     * **    *  **        
aAGATGGGGTTACTCTtTAcATTTcATGGGcTATGTCATTGGAtGTTATGGgTCaTTGCCACAAGAtCACATCAtACAgA
gc g     g  tcacc ga c  t     t   agt     ta  cgg   c  a  g  g  a  t  tgg  ta 
         c                  g           cg                    g       a   c 
                            a                                               t 

      1850      1860      1870      1880      1890      1900      1910      1920
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   *       **             **           *  * *           *      *    *           
AAATCAAAGAaTGTTTTAGAAAACTTCCTgTTAACAGgCCtATTGATTGGAAAGTcTGTCAACGtATTGTGGGTCTTTTG
 gc t c   c  c  cc g     c   a c  tc a               a     ga a     a  c  cc a
    g g   t                                          g        c               
          g                                            t                        

      1930      1940      1950      1960      1970      1980      1990      2000
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
      *  ** ** **    **  * *  ** **  *        *     *          *              * 
GGtTTTGCTGCCCCTTTtACACAATGTGGTTATCCTGCtTTaAtGCCcTTGTATGCaTGTATTCAaTCTAaGCAGGCTTT
  g     c  t  g  c  g      g        g  g a   t  a     c  c c   gg gcga        
  c        a        t                 c        a                 c  c           
  a                                   a                             a           

      2010      2020      2030      2040      2050      2060      2070      2080
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     *          *   *    **           * *       *  **  **        * ** *      *  
CACTTTCTCGCCAACTTACAAGGCCTTTCTGTGTAAACAATACCTGAACCTTTACCCCGTTGCcCGGCAACGGCCAGGTC
t  c  t      c g  t   a     t aca c       ta  cc               ta        t t    
               c                                               a           c    
                                                                                

      2090      2100      2110      2120      2130      2140      2150      2160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  * *  *   *    **  * ** ***   *  * *            *                             
TGTGCCAAGTGTTTGCTGACGCAACCCCCACTGGCTGGGGCTTGGTCATGGGCCATCAGCGCATGCGTGGAACCTTTctG
                              t          ct  a                           tc 
                                                                             ga 
                                                                             ag 

      2170      2180      2190      2200      2210      2220      2230      2240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   *     *  ** ***   *  **        * ** ** **                   **          *  * 
GCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCCGCTTGtTTTGCTCGCAGCAGGTCTGGAGCAAACATTcTCGGGAC
      t a           c              a     c            c       g  g   c ca t     
                                                                     g          
                                                                                

      2250      2260      2270      2280      2290      2300      2310      2320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 **  *        *  * *   *       **    *  ** ***      **       **  *  *     *     
gGATAACTCTGTTGTtCTCTCCCGCAAATATACATCgTtTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCG
t      c  a   t     t  g t   g  a ac              a   a                a    
a        g        a                 c                                           
                                                                                

      2330      2340      2350      2360      2370      2380      2390      2400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
      *  *  * * ****            ****                           * **       **  * 
GGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCcGCGGACGACCCtTCTCGGGGcCGCTTGGGaCTCTcTCGTCCC
                      c  a           t        t  g        t  tc a  gactga      t
                                     g           c           g     tg   t       
                                                                   c    g       

      2410      2420      2430      2440      2450      2460      2470      2480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    *          *  *   *     **** *     ****  **  *   **        **           *  *
CTTCTCCGTCTGCCGTTtCGaCCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCC
  ca at c        c at  a                            c                           
                    c                                                           
                    g                                                           

      2490      2500      2510      2520      2530      2540      2550       
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:..
 *                 *     *** *                                               
GGACCGTGTGCACTTCGCTTCA---CCTCTG---CAC---GTCGCAT------GGAGACCA---------CCGTG-A
  t               g                         a           a                    
                                                                             
                                                                             
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