HBVdb

Dataset for nucleotide sequence PreS2 of genotype A

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        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                        **    * 
ATGCAGTGGAATTCCACtGCcTTCCACCAAGCTCTGCAgGATCCCAGAGTCAGGGGtCTGTATtTTCCTGCTGGTGGCTC
gca--a  c cc g   aa t  t      a g  a  a  c    a     a   c      c c              
---  -     a                                                                    
                                                                                

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   *              **  *                 *              *           * *  *   *   
CAGTTCAGGAACAgTaAACCCTGcTCCgAATATTGCCTCTCACATCTCGTCAATCTCCgCGAGGACTGGGGACCCTGtga
           t c c       t  aa c  c  ta        a       c    t   c  t           cac
                                                                              tt
                                                                               g

       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
           *       **       *      *  *  *       **  *     *     * **    ** * **
CGAACATGGAGAACATCACATCAGGATTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATC
ta c                      c     a                                          a    
                                                                                
                                                                                

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*      *      *        *  *         *    *                     *  *     ** * *  
CTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGatCACCCGTGTGTCTTGGCCAAAA
           a                               g           acc ta       g         
                                                        gg                      
                                                                                

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
** **    *** *    **  * ** **  *         *        **  * * *  *    * *      *    
TTCGCAGTCCCCAACCTCCAATCACTCACCAACCTCCTGTCCTCCAATTTGTCCTGGTTATCGCTGGATGTGTCTGCGGC
                                    t          c         c     t                
                                                                                
                                                                                

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  * *  **    ** ** ** *** *    ** *** *                      *                  
GTTTTATCATATTCCTCTTCATCCTGC---TGCTATGCCTCATCTTCTTATTGGTTCTTCTGGATTATCAAGGTATGTTG
                                                 g     a        c gc  g         
                                                                                
                                                                                

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                    *                         *                * **        *  * 
CCCGTTTGTCCTCTAATTCCAGGATCaAC------AACAACCAGtACGGGACCaTGCAAAACCTGCACGACTCCTGCTCA
                          cg          c     c      a c    gg                    
                                                                                
                                                                                

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    *   ***     *  ** *     **         *  **     *   ****           * *      *  
AGGCAACTCTATGTTTCCCTCATGTTGCTGTACAAAACCTACGGAtGGAAATTGCACCTGTATTCCCATCCCATCgTCcT
     c       a             t                 c           t                 a  
                                                                                
                                                                                

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *  *  *  **  * * ** ***  *  * *  ** *    **        **     *  *     *     *  *  
GGGCTTTCGCAAAATACCTATGGGAGTGGGCCTCAGTCCGTTTCTCtTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGG
               t                  c         a                                 
                                              c                                 
                                                                                

       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*    *         * *           *      *     * *      *     *  *                   
TTCGTAGGGCTTTCCCCCACTGTTTGGCTTTCAGcTATaTGGATGATGTGGTAtTGGGGGCCAAGTCTGTACAgCATCgT
    c                  c       t  t   g        a t  tc          aa   cg  a  c t 
                                               t c              r     t         
                                                                                

       810       820       830       840       850     
....:....|....:....|....:....|....:....|....:....|....:
                                                       
GAGtCCCTTTATACCGCTGTTACCAATTTTCTTTTGTCTcTGGGTATACATTTAA
  ag      t            t         a t   t    c      c   
                                                       
                                                       
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