HBVdb

Dataset for nucleotide sequence Genomes of genotype A

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        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                          *  **    * *  ***     
TTCCACtGCcTTCCACCAAGCTCTGCAgGATCCCAGAGTCAGGGGtCTGTATtTTCCTGCTGGTGGCTCCAGTTCAGGAA
c     aa t  t  t   a g  aa a       ag    a   c      c c                a        
                                                                                
                                                                                

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
        * **        * *   *  *              *     * *   * ** *  **              
CAgTaAACCCTGcTCCgAATATTGCCTCTCACATCTCGTCAATCTCCgCGAGGACTGGGGACCCTGtgaCGAACATGGAG
t c c g     t  aa c  c  ta        a  a    c    t   c  t           cact  c       
  t             c                                  a               tt           
                                                                    g           

       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*       **       *  *   * **  *     * **  * **  * **  * **    ** * ***  * *** * 
AACATCACATCAGGATTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACC
               c     a                                 c        a               
                                                                                
                                                                                

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   ** ***   ** ** **    **    *  **       *         * ***   *** ***  *****    **
GCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGatCACCCGTGTGTCTTGGCCAAAATTCGCAGTCCC
a                               g           acc ta         g                    
                                             gg                                 
                                              a                                 

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
****   ** ***** ** ***      * *        **  *** * **    ***      *   * ** *  **  
CAACCTCCAATCACTCACCAACCTCCTGTCCTCCAATTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATA
                         t          c         c     t       a                   
                                                                                
                                                                                

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* ***** ** *** *    ** *** *  * **     * **       *       *   *              *  
TTCCTCTTCATCCTGCT---GCTATGCCTCATCTTCTTATTGGTTCTTCTGGATTATCAAGGTATGTTGCCCGTTTGTCC
                                      g     a  g     c gc  g                    
                                                                                
                                                                                

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
         * **         *     **             *  * **        ** *     *   ***     *
TCTAATTCCAGGATCaACAACAACCAGtACGGGACCaTGCAAAACCTGCACGACTCCTGCTCAAGGCAACTCTATGTTTC
    c        a c     c     c      a c    gg          g                    c     
               t                                                                
                                                                                

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* ** ** ** ****    *  *  **  *  *   **** * *    *  ****    ** ***  ** *  **  * *
CCTCATGTTGCTGTACAAAACCTACGGAtGGAAATTGCACCTGTATTCCCATCCCATCgTCcTGGGCTTTCGCAAAATAC
    c     t     c       t   c           t                 a  t                t 
                                        a                                       
                                                                                

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*******  *  * ***** ** * * *  **   ** **  ** *   * * *  **  *  *  * *        ** 
CTATGGGAGTGGGCCTCAGTCCGTTTCTCtTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCC
                 c         a                                     c            
                             c                                                  
                                                                                

       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*   *  ***  ** **  *  *  * **    **     *  *     *     * ** *  *      **        
CACTGTTTGGCTTTCAGcTATaTGGATGATGTGGTAtTGGGGGCCAAGTCTGTACAgCATCgTGAGtCCCTTTATACCGC
  t        c  t    g        a c  tc          aa    g  a  c   ag      t      
                              t                r                                
                                                                                

       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  *     ***** *        ****  * **  * *       *** *         **** **  *  *        
TGTTACCAATTTTCTTTTGTCTcTGGGTATACATTTAAACCCTAACAAAACAAAaAGATGGGGTTATTCCCTaAAcTTCA
      t               t         c    t           c  g        c      gc t  t 
                                                   t                    t       
                                                                                

       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  *  **    * *       *     *  * **  *    *  *        *   * *     ** **          
TGGGtTAcaTAATTGGAAGTTGGGGaACaTTGCCACAgGATCATATTGTACAAAAgATCAAAcACTGTTTTAGAAAACTT
    a  tg       c        tt tc a     a  g      a g     ac t   agt     cc g     g
    g                    g                                  t a               
    c                                                       g                 

       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**  *  *     *    *******     ** **     * *   *  *    **  * *      * *   * ** **
CCTGTtAAcaGgCCTATTGATTGGAAAGTATGTCAaAGaATTGTGGGTCTTTTGGGCTTTGCtGCtCCATTTACACAATG
  ca  tc a   g c           g     gc g     a              c  c  a  c  c        
                           c                                a  c              
                                                                                

      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *  ** ** ** ** *  **  * **  *    ** **  * *    * * *     *  **       *      ** 
TGGaTAtCCTGCcTTAATGCCTTTGTATGCATGTATACAAGCtAAACAGGCTTTcACTTTCTCGCCAACTTACAAGGCCT
   t  c  g  a        cc a               g gg        t     t                   
   g        t                             a                                     
                                                                                

      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  *          **       *   *  * * * *  * ** **    *     ** *****  * ** **  ***  
TTCTAAGTaAACAGTAcATGAACCTTTACCCCGTTGCtCGGCAACGGCCTGGTCTGTGCCAAGTGTTTGCTGACGCAACC
    gca ccc  a  tc  g                        t    c  a                     t
                                                                                
                                                                                

      1210      1220      1230      1240      1250      1260      1270      1280
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
***   ** ***** **  *  * ** *  * **** **   *      *   * **  *      ** ***** ** **
CCCACTGGcTGGGGCTTGGCcATaGGCCATCAGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGA
        t            c  a              c                                      
                     t                                                        
                                                                                

      1290      1300      1310      1320      1330      1340      1350      1360
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 ** *  *  *   *  * **  **    *    ** *      *  *  *     *  * *  *         *     
ACTCCTAGCcGCTTGTTTTGCTCGCAGCCGGTCTGGAGCAAAgCTCATcGGaACTGAcAATTCTGTCGTCCTcTCgCGGA
         t  c               a       g  g ca      g                  t  t    
         a                                c      c                            
                                                                                

      1370      1380      1390      1400      1410      1420      1430      1440
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  *   *     * **        *  * ***  *  ***   *** ** *   * **                 * ** 
AATATACATCgTTTCCATGGCTGCTAGGcTGTACTGCCAACTGGATcCTTCGCGGGACGTCCTTTGTTTACGTCCCGTCG
       c  a                 t               t     a  a           c     t     a
          c                 g                 a                                 
          t                                                                     

      1450      1460      1470      1480      1490      1500      1510      1520
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    ******   * ** ** ** **       *   *     * *  ** ** ** **  * *     *  *       
GCGCTGAATCCCGCGGACGACCCCTCtCGgGGCCGCTTGGGaCTCTcTCGTCCCCTTCTCCGTCTGCCGTtCCagCCGAC
           t           t  ga a  t  t     ga g                       at gt   t 
                          a  c           c  t                             a     
                          c              t                                      

      1530      1540      1550      1560      1570      1580      1590      1600
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                   *   *    * ***    ** **    *  *   **                    **** 
CACGGGGCGCACCTCTCTTTACGCGGTCTCCCCGTCTGTGCCTTCTCATCTGCCGGtCCGTGTGCACTTCGCTTCACCTC
                          a                     c       a              a        
                                                                                
                                                                                

      1610      1620      1630      1640      1650      1660      1670      1680
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**   *   * ***    *  *   * *                    ** **   * **  * *      *        
TGCACGTTGCATGGaGACCACCGTGAACGC------CCATCAGATCCTGCCCAAGGTCTTACATAAGAGGACTCTTGGAC
              ca                       c  agg t              t     c            
                                                                                
                                                                                

      1690      1700      1710      1720      1730      1740      1750      1760
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                  * * ********* *  ******  *  * * * **   **** **                
TCCCAGCAATGTCAACGACCGACCTTGAGGCCTACTTCAAAGACTGTGTGTTTAAgGACTGGGAGGAGcTGGGGGAGGAG
  t                            t                 a     a           at           
                               a                                                
                                                                                

      1770      1780      1790      1800      1810      1820      1830      1840
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                     *      **        **                        
ATTAGGTTAAaGgTCTTTGTAT------------TAGGAGGCTGTAGGCAt---AAATTGGTCTGCGCACCAgCAcCATG
 cg   c   t a t a   --t         at-               g              tt     ttct c  
 a                   c                                                    t     
                                                                                

      1850      1860      1870      1880      1890      1900      1910      1920
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                      *       **  * *** * *  ****** * *  ** *** 
CAACTTTTTCACCTCTGCCTAATCATCTCTTGTaCATGTCCCACTgTTCAAGCCTCCAAGCTGTGCCTTGGgTGGCTTTG
                             c   t       t   t                               a
                                             c                                  
                                                                                

      1930      1940      1950      1960      1970      1980      1990      2000
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 * ****    * ***     * *  * *  **  *           *       **  *  *    *  *  *  **  
GGGCATGGACATTGACCCTTATAAAGAATTTGGAGCTACTGTGGAGTTACTCTCgTTTTTGCCTTCTGACTTCTTTCCTT
  a         c     g                  t   c   a     t  a         ca   t  t     
                                                      t         g               
                                                                a               

      2010      2020      2030      2040      2050      2060      2070      2080
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
         *  *       **        *           *     *          *  **     *     * ** 
CcGTCaGaGATCTcCTaGAcACcGCCTCAGCTCTgTATCGaGAAGCCTTAGAGTCTCCTGAGCATTGCTCACCTCACCAT
 a cac g     a  t  t  a  a      t a t   g  t  ac g  a  a  g        ta cg g  t   
    t        t  g        t        c                                   t         
                                                                                

      2090      2100      2110      2120      2130      2140      2150      2160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 * **     **             * ****   *           *       **** **     **        *   
ACtGCACTCAGGCAAGCCATTCTCTGCTGGGGGGAATTgATGACTCTAGCTACCTGGGTGGGTAATAATTTGgAAGATCC
  a   a          ag  g a       t   tg a c  a t   gct t        c c      ac c  c a
  c                    t           cc                                           
                                                                                

      2170      2180      2190      2200      2210      2220      2230      2240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
           *     *  *     ** * **          **  * *      *           **    *    *
AGCATCcAGGGATCTAGTAGTcAATTATGTTAATACTAACATGGGttTAAAgATcAGgCAACTATTGTGGTTTCATATaT
t     a  a   ta      a        c  c a c t     cc    a  t  a   t g             ct 
      t              t                        a                               c 
                                                                                

      2250      2260      2270      2280      2290      2300      2310      2320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* *        ** **          *      * *  **  *    *  ** *  *** * *     **       ** 
CTTGCCTTACTTTTGGAAGAGAgACtGTaCTTGAaTATTTGGTCTCTTTcGGAGTGTGGATTCGCACTCCTCCAGCCTAT
 c  ta c     c      c agtg  c     g      t  c  t  g        a            c t  c
                      t     t              a                                a   
                      c     g                                                   

      2330      2340      2350      2360      2370      2380      2390      2400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
         ** ********* ****    ****   *      * **  * **                    *     
AGACCACCAAATGCCCCTATCTTATCAACACTTCCGGAAACTACTGTTGTTAGACGACGgGACCGA---GGCAGGTCCCC
       t                                  g         tata a-g-a-    c tc       
       a                                                   - - -                
                                                                                

      2410      2420      2430      2440      2450      2460      2470      2480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*     * *  * **  ****  **   *           ** **   **       * **  **** **          
TAGAAGAAGAACTCCCTCGCCTCGCAGACGcAGATCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAATCTCAAT
       c                      a           a                            g c c    
                                                                                
                                                                                

      2490      2500      2510      2520      2530      2540      2550      2560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
***  * * ** ** ** *     *  ** *        ** ** ** **          **    **  *       **
GTTAGTATTCCTTGGACTCATAAGGTGGGAAAcTTtACtGGGCTTTATTCcTCTACaGTaCCTATCTTTAATCCTGAATG
        c                    g  t  c  g  a  c  c  t     t  c   ggt     c     c  
                                                           g    a            t  
                                                           t                    

      2570      2580      2590      2600      2610      2620      2630      2640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*      **    ** *     ** **  *    *      *          **  *    *     **  *  *     
GCAAACTCCTTCcTTTCCTAAgATTCATTTACAaGAgGACATTatTAATAGGTGTCAaCAATTTGTgGGCCCTCTcACTG
   g  c  c  t     a  a  c        t  a  t   gccg c  a   g g     c  a      t  c 
                  g  c           c         t                               a    
                                 g                                              

      2650      2660      2670      2680      2690      2700      2710      2720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   * ** *           *      *   *** *   * *  *  *        *  *  **     *  *  * *  
TAAATGAAAAgAGAAGAtTgAAATTAATTATGCCTGCTAGaTTcTATCCTAcCcaCACtAAATATTTgCCctTAGACAAA
cg        a  g   c a  g  g  c     c     g  t  c    atagt  c  g  c  a  tc gc t   
                                                          a        c          
                                                                                

      2730      2740      2750      2760      2770      2780      2790      2800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 * ** **     *  *               *   ** *   *          ** *** *  * *   *  **     
GGaATTAAACCTTATTATCCaGATCAgGTAGTTAATCATTACTTcCAaACCaGACATTATTTACATACTCTTTGGAAGGC
  g     g           t  a  ta g           t  ta gg tc                        
                       c  a                       a                           
                                                                                

      2810      2820      2830      2840      2850      2860      2870      2880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 **  *  * *            *  *     *  * *        *   *    **     ******* *    *    
TGGtATTCTATATAAGAGGGAAACcACACGTAGCGCaTCATTTTGCGGGTCACCATATTCTTGGGAACAAGAGCTACAgC
g  gg ct        c a   t  t        c     c  t           c  c                 t 
                                    t                                           
                                                                                

      2890      2900      2910      2920      2930      2940      2950      2960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                   * *    **             *  *    *** *   * ***  
ATGGGAGGTTGGTcAtCaAAACCTCGCAAAGGCATGGGGACGAAtCTTTCTGTTCCCAAcCCTCTGGGATTCTTTCCCGA
------------at-c-c-c---                     c  a  g  ct a  t  g         c       
            -- g - -                           g                                
               - g                                                              

      2970      2980      2990      3000      3010      3020      3030      3040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *  **  * *  *  *  **    *   *  *     *    **  ** *    **       *        **     
TCATCAGTTGGACCCTGCATTCGGAGCCAAcTCAAACAATCCAGATTGGGACTTCAACCCCATCAAGGACCACTGGCCAg
      ac    t  g                                     t a gc   a  t  t      c
               c                                                               a
                                                                                

      3050      3060      3070      3080      3090      3100      3110      3120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
        *   *       *         * **  *     * ** **    **  *       *   *       ** 
cAGCCAAcCAGGTAGGAGTGGGAGCATTCGGGCCAGGGcTCACcCCtCCACACGGcGGTaTTTTGGGGTGGAGCCCTCAG
ag     t  a  g              t  c     at    t  c         cg cc                 
                                                           c                    
                                                                                

      3130      3140      3150      3160      3170      3180      3190      3200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *    *                                   *       *****                 ** ** * 
GCTCAGGGCATATTGaCcACAGTGtCAaCAaTTCCTCCTCCTGCCTCCACCAATCGGCAGTCAGGAAGGCAGCCTACTCC
     a    cgc  g t  tt  c ggt g g     ca        g           a     c a     c  a  
                 a  g                                                           
                                                                                

      3210      3220      3230      3240      3250    
....:....|....:....|....:....|....:....|....:....|....
  *     *                      *  **                  
CATCTCTCCACCTCTAAG------AGACAGTCATCCTCAGGCCATGCAGTGGAA
   t           c              c           agca  a  ---
   a                                                  
                                                      
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