HBVdb

Dataset for nucleotide sequence P of genotype all

[Download (right click)] [Download Frequencies (right click)] [Sequences] [Alignment]

        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
ATGCCCCTATCTTATCAACACTTCCGGAaACTACTGTTGTTAG------A------C------G------A------c--
           c    c  g        g a gg    a                 g      a             a  
                                t                       t      c                
                                                                                
                                                                                

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
----G------------------AG---------G------C------AG------GTCCCCTAGAAGAAGAACTCCCTC
           ggaccg gaccg t                                a     c     c          
           a            c                                                       
                                                                                
                                                                                

       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
GCCTCGCAGACGAAGgTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGG------GaA---T---CtCAATGTTAGT
a      c    c  a        a         c        a      ca       ct   c    ct       a 
                                                           g                    
                                                                                
                                                                                

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
ATtCCTTGGACtCATAAGGTGGGAAAcTTTACtGGGCTTTATTCtTCTACtGTaCCTgtCTTTAAtCCTgAaTGGcAAAC
  c  c     a  c        g  t  c  g  a  c  c  c   t gact   tgt  c  ct  act   at   
           g                       t              a  c   ac          c g   t    
                                                     g    a            c        
                                                                                

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
t---CCcTCtTTTCCTaAcATtCATTTacAggAgGAcATTaTtaAtAgaTGTcAaCAATtTGTgGGcCCtCTtACaGTaA
a     t  c     acgt  a  c  ga cc aa tc cgccgca ag  cg g  g ac  a  g  c  c  taat 
c     a  a     cg g  c        a      t g  ac c      a             t  a  a  c cc 
                  a           t            t                      a  g        g 
                                                                                

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
ATGAaAAaaGgAGAtTaaAATTaATtATGCCTGCTAGgTTtTATCCtAaccttACcAAATATTTgCCctTaGAtAAaGGc
 c  gttcc a  gc gc cc gg c     at c  a  c tc  c ctgac  t  g  c  a  ac g  c  g  t
      cg        t  g     a     c              a tgtg   g        t  ta    g     g
                                                 aac   a                 a     a
                                                                                

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
ATtAAACCtTATTATCCaGAacAtgtAGTTAATCATTACTTCcAaACtaGaCAtTATTTACAtACTCTgTGGAAGGCgGG
  c     g  c  c  t  gt gccg   g       t  ta gg cc g  c     g  c  ct t     a  t  
  a     a        g  ta ca                      g                    a        a  
        c        c     at                      a                                
                                                                                

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
tATttTATATAAgAGaGAaaCtACaCgtAGCGCcTCATTTTGtGGGTCACCATATTCTTGGGAACAAGAgCTACAgCATG
cg cc       ac g  gt c  t ac  t  a     c tc  a     t     c         a ta    t ---
g  a                 a  c        t                                              
a                                                                               
                                                                                

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
gga---ggttggtcttccaaacctc------gaaaaggcatgGGGacgAATCTTTCtgttccCAAtCCtCTGGGATTCTT
---   -------------------      --c--------  acaa  c ac  caccag   c  c        tc 
  g   ctacctcgaa agtca aa      tc-ggt   g            g  g  g        a           
       c  a  tg  g cg           gg                         a        g           
              c                                                                 

       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
tCCCGAtCAcCAGTTGGAcCCtGCaTTCagAGCcAActCaaacAATCCAGATTGGGACtTCAAcCCcaaCAAGGAccacT
c  a gc  t   c    t  actg   gag  a  ta cgca g   c  c     tca   taagct   a  tact 
g                    g  c                g                        at         ga 
                        t                                                       
                                                                                

       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
GGCCaGagGCcAAccAGGTaGGAG---tgGGAgCATTCGGGCcaGGgTTCACcCCaCCaCAcGGcgGt------------
  a gacct acgta    g       ct   tgc at  t tg  ac   tt  t  c  t  aaac            
    tcta   t g              a     t     a  t  t     a  c  g     g  a            
       t                                c                 t     t               
                                                                                

       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
cTtTTGGGGTGGAGCCCTCAGGCTCAGGGCaTatTgacaACagTGCCAg------------------------cAgctCC
a gc          t  g  a  a  a  tccgc acact tt at --c                     ag-gaaa  
g                a            g ta cg t  c      at                      at  tg  
t                                  t     g                                      
                                                                                

       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
tCCTCCTGCCTCcACCAATCGgCAGTCAGGAAGgCAGCCTACtCCcaTcTCTCCACCTcTaAG------agACAgTCATC
g        a  tg       c g gtc  gc aa a  a  c  gc aa       gt g        ga a ca    
a        t           t   a             c     at g                          c    
                                             tg t                          g    
                                                                                

      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
CTCAGGCCATGCA-GTGGAAcTCCAcaaCaTTCCACCAAgCTCTg---CaaGAtCCCAGAGTgAGgGgcCTgTAttTtCC
 a  a  agca   a     t  a gcgac  t  t  ga c  t   ttg  c  g ag  c-aa-ct--a--cc-c  
 g                     t  tc t              a           a     ac-- --  -  --    
                             g                                -        t        
                                                                       c        

      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
TGCTGGTGGCTCCAGTTCaGGAACAGTaAaCCCTGtTCcGAcTAcTGcCTCtccCATaTCGTCAATCTtcTCGAgGAcTG
            a     c aggt cag g     c  aa ac t  t   aga tcc  a    c  cagt  a  t  
                          cc                       gtt                    c     
                                                                                
                                                                                

      1210      1220      1230      1240      1250      1260      1270      1280
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
GGGACCCTGcaccGAAcATGGAGAaCAtcaCATCAGGAtTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTG
   g  t  tgat   t     agg  cag        c             t    c           t  g     c 
          tt          c      t                                                  
                                                                                
                                                                                

      1290      1300      1310      1320      1330      1340      1350      1360
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
TTGACAAgAATCCTCACAATACCaCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAaCacCCgtGTG
       a               ga                              g           aggtta  ac   
                                                                    ct c    g   
                                                                     c      a   
                                                                                

      1370      1380      1390      1400      1410      1420      1430      1440
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
TCtTGGCCAAAATTcGCAGTCCCcAAcCTCCAaTCACTCACCAACCTctTGTCCTCCAAtTTGTCCTGGtTATCGCTGGA
  c           t        a  t     g     t  t   t gc        g c         c     t    
  g                                                                  a          
                                                                                
                                                                                

      1450      1460      1470      1480      1490      1500      1510      1520
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
TGTGTCTGCGGCGTTTTATCATcTTCCTCTtCATCCTGCT---GCTATGCCTCATCTTCTTgTTGGTTCTTCTGGAcTAt
   a                  a       g                              a         g    t gc
                                                                                
                                                                                
                                                                                

      1530      1540      1550      1560      1570      1580      1590      1600
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
               *                                                                
CAAGGTATGTTGCCCGTTTGTCCTCTAaTTCCAGG------At------CatCAA---Cc------------AC------
  g              c        gc              a       ta g     t                    
                 g        c                       c        a                    
                                                           g                    
                                                                                

      1610      1620      1630      1640      1650      1660      1670      1680
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
------CA------------GcACgGGACCaTGCAaaACCTGCACgAcTCCTGCTCAAGGaAcCTCTATGTtTCCCTCaT
      a              tgtc  g  c   cgg       tagtaat  t      c a    t   a      t 
                        a                      g                              c 
                                                                                
                                                                                

      1690      1700      1710      1720      1730      1740      1750      1760
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                              *             *   
GTTGCTGTACaAAACCTtCGGAcGGAAAtTGCACcTGTATTCCCATCCCATCATCtTGGGCTTTCGcAAaATtCCTATGG
 c  t   t c     ca    ta    c     t                 g  c        a g  g  a       
                                                       a          t             
                                                                                
                                                                                

      1770      1780      1790      1800      1810      1820      1830      1840
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
GAGTGGGCCTCAGtCCGTTTCTCcTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGT
             c         t                c  a              g  cc             t   
                       a                                                        
                                                                                
                                                                                

      1850      1860      1870      1880      1890      1900      1910      1920
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
tTGGCTTTCAGtTATATGGATGATGTGGTaTTGGGGGCCAAGTCTGTACAaCATCTTGAgTCCCTTTtTaCCgCTgTTAC
c       t  c   g t      c    tc       g  aa    g cg  c g   ag      a g  t  a    
                        a                                                       
                                                                                
                                                                                

      1930      1940      1950      1960      1970      1980      1990      2000
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                      * *                       
CAATTTTCTTTTGTCTtTGGGTATACATTTaAACCCTaAcAAAACaAAaaGaTGGGGtTAcTCccTtaAcTTcATGGGaT
 c       gc a   c    c  c   c g  ta ccct     c  gc t     c  taatt ac t  t     t 
                g                    t g     t     g     a        g           c 
                                             g                    c           g 
                                                                                

      2010      2020      2030      2040      2050      2060      2070      2080
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
ATgTaATTGGaaGTTggGGtaCaTTgCCaCAgGAaCAtATtgTACaaAAAaTCAAacaaTGTTTTaGaAAACTtCCTgTa
 ca c     gt   at  ct t  a  g  a ct  c  caggttg  gc g  ggtc  c  cc g   t g  cact
    t     cg       g  c     c     c       a acc   t t   a g        t     c     c
          t        a  g     t     g           t         t t        c            
                                                                                

      2090      2100      2110      2120      2130      2140      2150      2160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
AAcaGgCCTATTGATTGGAAAGTaTGTCAaaGaATTGTGGGTCTTtTGGGcTTTGCtGCcCCtTTtACaCAATGTGGtTA
  tc a  ag    c     g  c  c  gc t  a  a  c  gc a  t  c  c  t  a  c  g        a  
     t  c              g        c        g  c     g     g  a  c     t        c  
     c                 t        g        a        a                 c        g  
                                                                                

      2170      2180      2190      2200      2210      2220      2230      2240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
tCCtGCtTTaATGCCtTTaTATGCaTGTATaCAAgCtAAgCAGGCTTTcACTTTCTCGCCAACTTACAAGGCCTTTCTgt
c  a  cc gca   cc g  ca c  c  tactt a ga  a     tgtc  t        c  t  aa t  ct aa
   c  a  c              g     c  ga g              a           g              cc
      g                          c  c                                           
                                                                                

      2250      2260      2270      2280      2290      2300      2310      2320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
GTAAACAaTAtcTGAACCTTTACCCCGTTGCcCGGCAACGGcCaGGTCTgTGCCAAGTGTTTGCTGACGCAACCCCCACT
acccc  g  ca  cc               ta        t t  c  c                 t            
           t                   g         g c     t                              
                               a                 a                              
                                                                                

      2330      2340      2350      2360      2370      2380      2390      2400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
GGcTGGGGCTTGGccATaGGCCATCagCGCATGCGTGGAACCTTTgTGgCTCCTCTGCCGATCCATA---CTGCGGAACT
  t          ttt g c     gc   c a  c  g      cc t    gt a              c        
  a           ac t                           ta                        g        
              g  c                           ag                                 
                                                                                

      2410      2420      2430      2440      2450      2460      2470      2480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
CCTAGCcGCTTGTTTTGCTCGCAGCcGGTCTGGaGCaAAacTtaTCGGgACtGAcAAcTCTGTtGTcCTcTCcCGgAAaT
   t  a  c  c  c         a       g  g cca cc t  a  c  t  t  c  c  t  t  ta c  g 
   g  t                                g     a  c  g        g     g  a  g  a    
      g                                t        t  a              a             
                                                                                

      2490      2500      2510      2520      2530      2540      2550      2560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
AtACaTCcTTTCCATGGCTGCTaGGcTGTgCTGCCAACTGGATCCTgCGCGGGACGTCCTTTGTtTACGTCCCGTCGGCG
 c  c  g ac           c  g   a             t  t  a  a           c        c  a   
       a                 t                    a                                 
       t                 a                                                      
                                                                                

      2570      2580      2590      2600      2610      2620      2630      2640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    *                                                                           
CTGAATCCcGCGGACGACCCcTCtCGGGGcCGcTTGGGaCTCTacCGtCCcCTTCTcCgtCTGccGTtcCggCCGACCAC
        t        t  g  c  c  t  tc    ga g ct  c  g  c  ttac  att  at aa  at g  
        a           t  g  a           cg t g      t     g     cg       t        
                    a                 t    t                                    
                                                                                

      2650      2660      2670      2680      2690      2700      2710      2720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
GGGGCGCACCTCTCTTTACGCGGtCTCCCCGTCTGTGCCTTCTCATCTGCCGGaCCGTGT--GCACTTCGCT-TCACCTC
   t                   a            t       g   a    t                          
                       c                             g                          
                                                     c                          
                                                                                

      2730      2740      2750      2760      2770 
....:....|....:....|....:....|....:....|....:....|.
                                                   
TG---CAC---GTcGCAT------GGAgACCA---------CCGT---G-A
             t            ca                    - -
                                                   
                                                   
                                                   
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