HBVdb

Dataset for nucleotide sequence Genomes of genotype all

[Download (right click)] [Download Frequencies (right click)] [Sequences] [Alignment]

        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                **              
cTCCACaaCaTTCCACCAAgCTCTg---CaaGATCCCAGaGTgAGgGgcCTgTAttTtCCTGCTGGTGGCTCCAGTTCaG
t  a gcgac  t  t  ga c  t   ttg  c  g ag  ccaa ct  a  cc c              a     c 
   t  tc t              a           a     a        t                            
         g                                         c                            
                                                                                

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
           *                                                        *           
GAACAGTaAaCCCTGtTCcGAcTAcTGcCTCtccCATaTCGTCAATCTtcTCGAgGAcTGGGGACCCTGcaccGAACATG
ag t cag g     c  aa ac t  t   aga tcc ta    c  cagt  a  t     g  t  tgat   t   
      cc                       gtt                    c               tta       
                                                                                
                                                                                

       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
GAGAaCAtcaCATCAGGAtTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAgAATCCTCACAAT
  a g  cag        c             t    c           t  g     c        a            
  c      t                                                                      
                                                                                
                                                                                

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                        *                                                   *   
ACCaCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAaCacCCgtGTGTCtTGGCCAAAATTCGCAGT
   ga                              g           aggtta  ac     c           t     
                                                ct c    g     g                 
                                                 c      a                       
                                                                                

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
              *                          *                            *         
CCCcAAcCTCCAaTCACTCACCAACCTctTGTCCTCCAAtTTGTCCTGGtTATCGCTGGATGTGTCTGCGGCGTTTTATC
   a  t     g     t  t   t gc        g c         c     t       a                
                                                 a                              
                                                                                
                                                                                

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                     **            *       *    
ATcTTCCTCTtCATCCTGCT---GCTATGCCTCATCTTCTTgTTGGTTCTTCTGGAcTAtCAAGGTATGTTGCCCGTTTG
  a     t g                       c      a         g    t gc gg              c  
                                                                             g  
                                                                                
                                                                                

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
TCCTCTAaTTCCAGG------At------CatCAA---Cc------------AC------------CA------------
      cc              a       ta g     t                          a             
      g                       c        a                                        
                              g        g                                        
                                                                                

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                        *  *                    
GcACgGGACCaTGCAaaACCTGCACgAcTCCTGCTCAAGGaAcCTCTATGTtTCCCTCaTGTTGCTGTACaAAACCTtCG
 tgtc  g  c   cgg       ta taat  t      c a     c  a      t  c  t   t c     cat 
    a                      g                              c                     
                                                                                
                                                                                

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                           *              *    *        *              *  *     
GAcGGAAAtTGCACcTGTATTCCCATCCCATCATCcTGGGCTTTCGcAAaATtCCTATGGGAGTGGGCCTCAGtCCGTTT
  ta    c     t                 g  t        a g  g  a                    c      
                                   a          t                                 
                                                                                
                                                                                

       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                               *                               *              **
CTCcTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTtTGGCTTTCAGtTATATGGA
   t                c  a              g  cc             t   c       t  c   g t  
   a                                                                            
                                                                                
                                                                                

       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
       *     **                                                                 
TGATGTGGTaTTGGGGGCCAAGTCTGTACAaCATCTTGAGTCCCTTTtTaCCgCTgTTACCAATTTTCTTTTGTCTtTGG
    c    tc       g  aa    g cg  c g   ag      a g  t  a     c       gc a   c   
    a                                                                       g   
                                                                                
                                                                                

       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                 ****                                           
GTATACATTTaAAcCCtaAcAAAACaAAaaGaTGGGGtTAcTCccTtaAcTTcATGGGaTATgTaATTGGaaGTTggGGt
 c  c   c g  ta ccct  g  c  gc t     c  taatt ac t  t     t  ca c     gt c at  g
                 t g     t     g     a        g           c     t     cg       c
                 g       g     c              c           g           t        a
                                                                                

       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
               *                                       *                        
aCaTTgCCaCAgGAaCAtATtgTAcaaAAAaTCAAacaaTGTTTTaGaAAACTtCCTgTaAAcaGgCCTATTGATTGGAA
t tc a  g  a ct  c  caggttg  gc g  ggtc  c  cc g   t g  cact  tc a  ag    c     
g c     c     c       a a c   t t   a g        t     c     c     t  c           
  g     t     g           t         t t        c                 c              
                                                                                

      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                            *                        *                          
AGTaTGTCAacGaATTGTGGGTCTTtTGGGcTTTGCtGCcCCtTTtACaCAATGTGGtTAtCCtGCtTTaATGCCtTTaT
g  c  c  ga t  a  a  a  gc a  t  c  c  t  a  c  g        a  c  a  cc gca   cc g 
   g        c        g        g        a  c     t        c     c  a  c          
   t        g        c        a                 c        g        g             
                                                                                

      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
ATGCaTGTATaCAAgCtAAgCAGGCTTTcACTTTCTCGCCAACTTACAAGGCCTTTCTgtGTAAACAaTAtcTGAACCTT
 ca c  c  tactt acga  a     tgtc  t        g  t  aa t  ct aaacccc  g  ca  cc    
    g     c  g  g              a                          cc           t        
             c  c                                                               
                                                                                

      1210      1220      1230      1240      1250      1260      1270      1280
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                      * *        *              
TACCCCGTTGCcCGGCAACGGcCaGGTCTgTGCCAAGTGTTTGCTGACGCAACCCCCACTGGcTGGGGCTTGGccATaGG
           ta        t t  c  c                 t              t          ttc g c
           a         g c     t                                a           a  t  
           g                 a                                            g  c  
                                                                                

      1290      1300      1310      1320      1330      1340      1350      1360
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                    *           
CCATCaGCGCATGCGTGGAACCTTTgTGgCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCcGCTTGTTTTGCTCGCA
   c gc   c    c  g      cc t    gt a           c           t  a  c  c  c       
                         ta                     g           g  t                
                         ag                                    g                
                                                                                

      1370      1380      1390      1400      1410      1420      1430      1440
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                 *                          *       *    *      
GCcGGTCTGGaGCaAAacTtaTCGGgACtGAcAAcTCTGTtGTcCTcTCcCGgAAaTAtACaTCcTTTCCATGGCTGCTa
  a       g  g cca cc t  a  c  t  t  c  c  t  tg ta c  g  c  c  g ac           c
                gg    a  c  g        g     g  a  g  a           a               
                t        t  a              a        t           t               
                                                                                

      1450      1460      1470      1480      1490      1500      1510      1520
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                             * *                
GGcTGTgCTGCCAACTGGATCCTgCGCGGGACGTCCTTTGTtTACGTCCCGTCGGCGCTGAATCCcGCGGACGACCCcTC
  g   a             t  t  a  a           c        c  a  a        t        t  g  
  t                 a  a                                         a           t  
  a                                                                          a  
                                                                                

      1530      1540      1550      1560      1570      1580      1590      1600
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
tCGGGGcCGcTTGGGaCTCTacCGtCCcCTTCTcCgtCTGccGTtcCggCCGACCACGGGGCGCACCTCTCTTTACGCGG
c  c  t  tc    ga g ct  c  g  c  ttac  att  at aa  at g     t                   
g  a           cg t g      t     g     cg       t   c                           
               t    t            a                                              
                                                                                

      1610      1620      1630      1640      1650      1660      1670      1680
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                           **   
tCTCCCCGTCTGTGCCTTCTCATCTGCCGGaCCGTGTGCACTTCGCTTCACCTCTGCAC---GTcGCAT------GGAgA
a            t       g  ca    t                                 t            ca 
c                             c                                                 
                              g                                                 
                                                                                

      1690      1700      1710      1720      1730      1740      1750      1760
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
CCACCGTGAACGC------CC---------acc---------a------------gatC---------------------
           a       tt         gta         g            agaa                     
                    a         cat         t            ctgt                     
                                g                        cg                     
                                                                                

      1770      1780      1790      1800      1810      1820      1830      1840
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
t---------TGCC---------------CAAGGTCTTaCATAAGAGGACTCTTGGACTctCaGcAAT---GTCAACGAC
c                            a ca  g  gt    ac     a       tcttatgcg        ta  
                             t                              g g gc           c  
                                                              c                 
                                                                                

      1850      1860      1870      1880      1890      1900      1910      1920
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
------------CGACCTTGAGGCaTACTTCAAAGACTGTgTgTTTAaaGAcTGGGAGGAGtTGGGGGAGGAGatTAGgT
             tgga c  a ac   a           t a  cgcg  g        acca         gcc  ac
                        g                       t                        cag    
                                                                         tg     
                                                                                

      1930      1940      1950      1960      1970      1980      1990      2000
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
TAAaGgTCT---TTGTAcTAGGAGGCTGTAGGCATA---AATTGGTcTGttCACCAGCACCATGCAACTTTTTCACc---
 g t a t    a    t g              g           gc cgt    t  t                -   
     t g                                                                        
                                                                                
                                                                                

      2010      2020      2030      2040      2050      2060      2070      2080
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
------------------------------------------------------TCTGCCTAATCATCTCaTGTTCATGT
                                                     c        g      tt   a     
                                                                                
                                                                                
                                                                                

      2090      2100      2110      2120      2130      2140      2150      2160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
CCtACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTgGGgCATGG-------------------------------
t c   t                         a       a  a                                    
                                                                                
                                                                                
                                                                                

      2170      2180      2190      2200      2210      2220      2230      2240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                  *                                                             
-----ACATTGACCCgTATAAAGAATTTGGAGCTtCTGTGGAGTTACTCTCtT---TT------TTGCCTTCTGACTTCT
         c  taat                 aa c c   a  g     g                  gac  t  t 
               a                                   a                  a g       
               c                                                      c         
                                                                                

      2250      2260      2270      2280      2290      2300      2310      2320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
TTCCtTCtaTtcGaGATCTcCTcGAcACCGCCTCtGCTCTgTATCGGGAgGCCTTAGAGTCTCCgGAaCATTGtTCACCT
ac  ga ag aa g  c  t  a  t  a  ta a  ct actca a  a  tc    a  at t  g     ca cgac
    a  c  c  t     a  t     t  ag c     c        t  a           a           tt g
       g           g                                                        g   
                                                                                

      2330      2340      2350      2360      2370      2380      2390      2400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                              *                 
CACCATACaGCACTcAGGCAAGCtATTcTgTGtTGGGGtGAgtTgATGAaTcTaGCcACCTGGGTGGGaagTAATTTGGA
a t  c  t  ta a        ag ct t  c    tg  ac a   tcct g  tt t        tgaa  c  ac 
        g              c  ag c        a  c              a           c tc        
        c                    a           t                            c         
                                                                                

      2410      2420      2430      2440      2450      2460      2470      2480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                           *    
AGAtCCAgCATCcAGGGAatTAGTAGTcAgcTATGTcAAtgtTAAtATGGGCcTAAAaaTcAGaCAAcTatTGTGGTTTC
c  c atattg tc a  cccga g  agat     t  cac c cg    tt g  gt t  g   t cc a     c 
g     g     a     tga   t  t                       aa     c        a g          
t                                                                    t          
                                                                                

      2490      2500      2510      2520      2530      2540      2550      2560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                  *             
AcATTTCcTGtCTtACTTTTGGaAGAGAaACtGTtcTtGAgTATTTGGTgTCTTTtGGAGTGTGGATTCGCACTCCTcCa
 tg a  t  ca c tc     g a c ggtg  ca a  a  c     c  c  c  g        c     a  caat
    c           g           t  a  at c           a                          a tc
                            c  c   g                                            
                                                                                

      2570      2580      2590      2600      2610      2620      2630      2640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                *              *                    *                           
GCtTAtAGACCACCAAATGCCCCTATCTTATCAACACTTCCGGAaACTACTGTTGTTAGACGA------c----------
c a  c  g   tat            c    c  g        g a tg    a     ga       a      g   
  c                                             g            c                  
                                                                                
                                                                                

      2650      2660      2670      2680      2690      2700      2710      2720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
--------GA------G------GCAG------GTCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAGgTCTCAAT
   ggacc        t                 a     c     c          a      c    c  a       
   a            c                                                               
                                                                                
                                                                                

      2730      2740      2750      2760      2770      2780      2790      2800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
CGCCGCGTCGCAGAAGATCTCAATCTCGGGaA---T---CtCAATGTTAGTATtCCTTGGACtCATAAGGTGGGAAAcTT
 a         c     a  a      ca ct   c    c        a   c  c     a  c  a     g  t  
                              gc                     a  g     g                 
                                                                                
                                                                                

      2810      2820      2830      2840      2850      2860      2870      2880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     *                                                          *               
TACgGGGCTTTATTCtTCTACtGTaCCTgtCTTTAAtCCTgAaTGGcAAACt---CCcTCtTTTCCTaAcATtCATTTac
c  t  a  c  c  c  ct gact   agt  c  ct  cct   at   a     t  c     ag t  a  c  ga
      t              a  c   tc          a g   t    c     a        cc g  c       
                        g    a            c                          a          
                                                                                

      2890      2900      2910      2920      2930      2940      2950      2960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                    *                                           
AggAgGAcATTaTtaAtAgaTGTcAaCAATtTGTgGGcCCtCTtACaGTaAATGAaAAaaGgAGAtTaaAATTaATtATG
 cc aa tc cgccgca ag  cg g  g ac  a  g  c  c  taat  c  gttcc a  gc gc cc gg c   
 a      t g  ac c      a             a  a  a  c cc       cg           g     a   
 t            t                      t  g        g                              
                                                                                

      2970      2980      2990      3000      3010      3020      3030      3040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                               *                                                
CCTGCTAGgTTtTATCCtAaccttACcAAATATTTgCCctTaGAtAAaGGcATtAAACCtTATTATCCaGAacAtgtAGT
  at c  a  c tc  c ctgac  t  g  cc a  ac g  c  g  t  c     g  c  c  t  gt gccg  
  c              a tgtg   g        t  ta    g     g  a     a        g  ta ca    
                    aac   a                 a     a        c        c     at    
                                                                                

      3050      3060      3070      3080      3090      3100      3110      3120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                         *                                      
TAATCATTACTTCcAaACtaGaCAtTATTTACAtACTCTgTGGAAGGCgGGtATttTATATAAgAGaGAaaCtACACgtA
         t  ta gg cc g  c     g  c  ct t     a  t  cg cc       ac g  gt ct t ac 
                  g                    a        a  g  a                 a  c    
                  a                                a                    g       
                                                                                

      3130      3140      3150      3160      3170      3180      3190      3200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
GCGCcTCATTTTGtGGGTCACCATATTCTTGGGAACAAGAgCTACAgc------------------a-------------
 t  a     c tc  a     t     c        ca ta    t-                  -tgggaggttggtc
    t                                                                           
                                                                                
                                                                                

      3210      3220      3230      3240      3250      3260      3270      3280
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
----------------------aa------------------a------------------c------------------
ttcc tgggaggttggtcttcc--gggaggttggtcttcaaa-ggagcacctctatcaacg-                  
c             c  ta  a t                  g                  g                  
                                                             a                  
                                                                                

      3290      3300      3310      3320      3330      3340      3350      3360
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
c------------------t---------------c---------------g---------------a------------
-agcacctctctcaacgac-               -               -ttcttggacggtccc-            
g                  g               a               t               c            
                   a                                               t            
                                                                   g            

      3370      3380      3390      3400      3410      3420      3430      3440
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
---a---------------a-a--------------gg---------------C-A-TGGGGacgAATCTTTCtgtcccC
   c               - -              --               a t g   acaa  c ac  cactaga
   -               g c               a               - -              g  g  g   
                   t g                                                      a   
                                                                                

      3450      3460      3470      3480      3490      3500      3510      3520
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   *            *                                                      *        
AAtCCtCTGGGATTCTTtCCCGAtCAcCAGTTGGAcCCtGCaTTCagAGCcAActCaaacAATCCAGATTGGGACtTCAA
  c  c        tc c  a gc  t   c    t  actg   gag  a  ta cgca g   c  c     tca   
     a           g                    g  c                g                     
     g                                   t                                      
                                                                                

      3530      3540      3550      3560      3570      3580      3590      3600
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
cCCcaaCAAGGAccacTGGCCaGacGCcAAcaAGGTaGGAG---tgGGAGCATTCGGGCcaGGgTTCACcCCaCCaCAcG
taagct   a  tact   a gacgt acgtc    g       ct   tgc at  t tg  ac   tt  t  c  t 
   at         ga     tcta   t g              a     t     a  t  t     a  c  g    
                        t                                c              g  t    
                                                                                

      3610      3620      3630      3640      3650      3660      3670      3680
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
GcgGt------------cTtTTGGGGTGGAGCCCTCAGGCTCAGGGCaTatTgacaACagTGCCAg--------------
 aaac            a gc          t  g  a  a  a  tccgc acact tt at  ac             
 g  a            g                a            g ta cg t  c      -              
 t               t                                  t     g                     
                                                                                

      3690      3700      3710      3720      3730      3740      3750      3760
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
----------cAgctCCtCCTCCTGCCTCcACCAATCGgCAGTCAGGAAGgCAGCCTACtCCcaTcTCTCCACCTcTaAG
         gtgaaa  g        t  t        c g gtc  gc aa a  a  c  gc ga        t gc 
          -  tg  a        a           t   a             c     at a              
                                                              tg t              
                                                                                

      3770      3780      3790       
....:....|....:....|....:....|....:..
                                     
------agACAcTCATCCTCAGGCCATGC-AGTGGAA
      ga   ga     a  a  agca   a     
            g                        
            c                        
                                     
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