HBVdb::Dataset - Hepatitis B Virus Database

Dataset for nucleotide sequence PreS1 of genotype RF

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        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                         *  *     *   *  * **
atgggaggttggtcttccaaacctcgacaaggcATGGGGacgAATCTTTCtgttccCAATCCtCTGGGATTCTTtCCCGA
---------------------------------tg   acaa  c ac  caccag   c  c  a     tc c    g
     gct cct gaa agtc    tcagc ag              g              a
             tg  g        tg                   a
              c

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
** **   **        *      *     *       *  ** ****    **        *        * *
tCAcCAGTTGGAcCCtGCgTTCggAGCcAActCaaacAATCCAGATTGGGACtTCAAcCCcaACAAGGAccacTGGCCaG
c  t        t  a  a  taa   a  ta cgca g   c         ca   t  gcta  a  tact   a gc
               g  c                g                        a           a      a
                  t


       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   *           *    **        *             **    *         *  * **          *
AgGCcAAccAGGTaGGAGcgGGAGCATTCGGGCcaGGgTTCACcCCaCCaCAcGGcGGtCTtTTGGGGTGGAGCCCTCAG
cct ac ta    g    tt   t c at  a tg  tc   tt  t  g  t  aaacg gc      c      g  a
a                 a              c  a     a  g  c     g  aa
t                                            c  t         t


       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   *                                               *                     * *  **
GCTCAGGGCaTAtTgacAACagTGCCAGCAgctCCtCCTCCTGCCTCcACCAATCGgCAGTCAGGAAGaCAGCCTACtCC
t a  a  tccgc acacgatt at  at aaa  g        t  tg       c   gtc  gc ga a  a  c
         g  a cg tt c          tg  a        a  a        t   a             c
                    g


       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
       *   *  *           * **  *          **
caTcTCTCCACCTcTaAGagACAgTCATCCTCAGGCCATGCAGTGGAAcTCCACaACcTTCCACCAAaCTCTgCaAGATC
gc ga       at gc gac  cc     a  a   g aa a     t  t gcgat  t tt   g    t tga c
at a                    g                          a  t  a              a
tg t                                                     g


       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                       * ** ***  *       *              *    **  *
CCAGaGTgAGaGgcCTgTAtTTcCCTGCTGGTGGCTCCAGTTCaGGAACAGTaAaCCCTGtTCcGAcTACTGcCTCTccC
a ag  c ag ct  a  cc t              a     c ag t ccg g     c  aa ac t  ta  aga
g     a        t                                   c                        tt
                                                                             a


       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   *        *          ** **  * **     *  ***   *  *   ****  *   **    *****
ATATCGTCAATCTTcTCGAgGAtTGGGGACCCTGcgCcGAACATGGAGAACATCaCATCAGGAtTCCTAGGACCCCTGCT
tcc ta    c  cagt  a  c     g  t  taat  ct       g  cag        c     ac      t
                   c                 a               tt



       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**       * *** **    ** ***          * *    *  *    * *              *  ***   *
CGTGTTACAGGCGGGGTTTTTCTTGTTGACAAgAATCCTCACAATACCgCAGAGTCTAGACTCGTGGTGGACTTCTCTCA
  c                    c        a               aa                  t




       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
** **   * *           ** * ** ** ** **  ***  **  * *  *   ****  * *   *  *** *
ATTTTCTAGGGGGAaCtaCCGtGTGTCtTGGCCAAAATTCGCAGTCCCcAAcCTCCAaTCACTCACCAACCTccTGTCCT
g           aggtac  ac     c     t     t        a  t     g            t gt
              tac          g
                g


       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*     **    ** ****    *   *   *****   * * *  *   ***   *
CCAAcTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATaTTCCTCTtCATCCTGCTGCTATGCCTCATCTT
ag t         c     t       a                  c       g




       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* *    *  *    *** *       **  *  *  *   * *                    *  *        **
CTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAaTTCCAGGAtCtTCAACcACCAGCACgGGAC
   a         g    t  c  c              g        gc        a aa g  a  a  t  c   t
                        g                       c           c     t        a   a
                                                            g     g


       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* ***      ***        **           * *  *     *** ** ** ***    **      *   * **
CcTGCAgaACCTGCACgACTCCTGCTCAAGGAACCTCTATGTaTCCCTCcTGTTGCTGTACAAAACCTtCGGAcGGAAAt
a   cag        a t at     g aac a    t   t      a     t   t c      at   t     c
                                                 t



       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
** * *******  * *** *   * * ** ***   *      **** *     ** *   * ** *****    **
TGCACcTGTATTCCCATCCCATCATCcTGGGCTTTCGgAAAATtCCTATGGGAGTGGGCCTCAGcCCGTTTCTCtTGGCT
     t                 g  t          c  g  a                    t         c
                          a                                               a



      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
** **   *    *  * * ***  *     *   *   ***** *   *  ***   *    *** * **  ** * *
CAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTtTGGCTTTCAGTTATATGGATGATGTGGT
     c     c                    c              t   c       t  c   g        a
                                                                           c



      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   ***  *             ** *  **     * * *              ****           ***    **
aTTGGGGGCCAAGTCTGTACAgCATCTTGAGTCCCTTTtTaCCGCTGTTACCAATTTTCTTTTGTCTTTGGGTATACATT
tc       g  aa    gtca  c g   ag      a g  t  a                    c    c      c





...
* *
TaA
g