HBVdb

Dataset for nucleotide sequence PreS1 of genotype RF

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        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
atggga-------ggttggtcttccaaacctcgacaaggcATGGGGa---------------------------------
------       ---------------------------     ac     tctt  a     c  c   a   gggga
     g         acc a cc a c t    ga                                             
                     aa          c                                              

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                 *  *         *  *       *  **    *  *      *    *  **  *       
cgAATCTTTCtgttccCAATCCTCTGGGATTCTTTCCCGAtCAcCAGTTGGAcCCtGCgTTCgGAGCcAACtCaaacAAT
aa  c ag  caccaga  c  c        tc c    gc  t        t  a  c  taa   a  ta cgca  c
       c     a                                         g  a                g   a
       a                                                  t                     

       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  ** ** *     *                 * *                        *         *         
CCaGATTGGGACTTCAAcCCCAACAAGGAtcacTGGCCAGAgGCaAAtcAGGTAGGAGcgGGAGCATTCGGGCcaGGgTT
  c         c    t  gcta     cact     gccc  cc ca    g  g tt   t c at  attg  tc 
                                a      a a                 a                 a  
                                                                                

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    **    *         *  *  *                *   *                            *   
CACcCCaCCaCACGGcGGtCTTTTGGGGTGGAGCCCTCAGGCTCAGGGCATAtTgacAACagTGCCAGcAgcaCCtCCTC
   t  t  g  t  aaacg gc             g  a  c  a   ccgc acacgact     at aat  g    
      c  c     g  a                                 a c   c t          tg  a    
      g  t                                                  g                   

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                 * ** **          **  *             **          
CTGCCTCcaCCAATCGgCAGTCAGGAAGaCAGCCTACtCCcaTcTCTCCACCTcTaAGAgACAgTCATCCTCAGGCCATG
    ag tg       c   a    gc g  a  c  c  gc ga a     at gc gac  cc        a   g a
    t  a        t                 a     at a                  g               
                                  g     t  t                                    

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    *                                                          *  * ***  *      
CAGTGGAAcTCCACAACcTTCCACCAAaCTCTgCaAGAtCCCAGaGTgAGgGGCCTgTAttTtCCTGCTGGTGGCTCCAG
       ct  a gcgaa  t tt   g    tttg  c    aga c aa ct  a--cc c              a c
           t  t  t              a              a        t  --                   
                 g                                                              

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
               ** *  **  *                          *          ** **     *      
TTCaGGAACAGTAAACCCTGTTCCGAcTACTGcCTCtCcCATaTCGTCAATCTTCTCGAgGAtTGGGGACCCTGCaCcGA
   c cggt acg g     c  aa ac t  t   aga tcc ta       caa   a  c        t  tgat  
          c c                       g                  g   c                ga  
                                                                                

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  ***   *  *    **       **      * *             ** **       ** *    *     * ***
ACATGGAGAaCAtcaCATCAGGATTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAgAATCCTC
 t        cag    c   c    cac      t    ca          ta       c        a       
                                                                                
                                                                                

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *  *  *      *          *  *    ***  *  ** *      *          *** * *  **  * ** 
ACAATACCgCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAaCacCCgtGTGTCtTGGCCAAAATTC
        aa                              g           aggtta  ac     c           t
                                                      t c    g     g            
                                                        g                       

       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
****  **  * * **   * **  * *   *  ***         **    ** * **    *   *    ***    *
GCAGTCCCCAACCTCCAATCACTCACCAACCTCcTGTCCTCCAAcTTGTCCTGGtTATCGCTGGATGTGTCTGCGGCGTT
         t     g              gt       ag tc        c     t       a           
                                                      a                         
                                                                                

       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 * * **   *     *  *  *      *****   **  ** *  *  *    *** *     ****      * *  
TTATCATaTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGAcTAtCAAGGTATGTTGCCCGTT
       c       g                           a         g    t gc  g              g
                                                                                
                                                                                

       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 * *        *         * *           *   * **       ***        **             *  
TGTCCTCTAaTTCCAGGAtCaTCaACcACCAGCACGGGACCaTGCAgaACCTGCACGAcTcCTGCTCAAGGAACCTCTAT
        gc        a ta g  tg a  tgta  ga c   cag       ta taa   t  g a c a      
                    c     a        c   t t                                      
                    g                                                           

       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    * **  *  *  * *   * ** *   *          *** *******  * ***    *   ***  *    **
GTaTCCCTCcTGTTGCTGTACaAAACCTTCGGAcGGAAAcTGCACcTGTATTCCCATCCCATCATCcTGGGCTTTCGcAA
  t      t  c  t    tc      at   t     t     t                 g  t          g  
         a                                                        a          t  
                                                                                

      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     * ****     *  ** ** ** *****     * **      *    ** * *   *  *     *  **    
aATTCCTATGGGAGTGGGCCTCAGcCCGTTTCTCcTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTT
g  a                 t  t         t          c     c                          
                                  a                                             
                                                                                

      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**** *  **  ***   *     *    **  *  * *     ***                * *  **       *  
TCCCCCACTGTTTGGCTTTCAGTTATATGGATGATGTGGTATTGGGGGCCAAGTCTGTACAaCATCTTGAGTCCCTTTtT
       t   c       t  c   g t      c    tc       g  aa    g cg  c   ag      
                                                                                
                                                                                

      1210      1220      1230      1240   
....:....|....:....|....:....|....:....|...
          *   **        *   ****    *   *  
ACCgCTgTTACCAATTTTCTTTTGTCTTTGGGTATACATTTgA
g  t  a      c      gg     c           c 
                                           
                                           
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