HBVdb

Dataset for nucleotide sequence PreS1 of genotype RF

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        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
---------------------------------ATGGGa-------ggttggtcttccaaacctcgacaaggcatgggga
                                   ---gctttcttc---------------------------------
                                      -       - acct  ccga cggtc cgatc aatg   a 
                                                  t   a  g   t    cg g          
                                                                  t             

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                 *  *         *  *       ** **    *  *      *    *  **  *       
cgAATCTTTCtgttccCAATCCTCTGGGATTCTTTCCCGAtCAcCAGTTGGAcCCtGCgTTCgGAGCcAACtCaaacAAT
aa  c ag  caccaga  c  c  a     tc c    gc  t        t  a  c   aa   a  ta cgca  c
       a     a                          a              g  a              t g   a
                                                          t                     
                                                                                

       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  ** ****     *                 * *               *   *    **        *         
CCAGATTGGGACTTCAAcCCCAACAAGGAtcacTGGCCAGAgGCaAAtcAGGTAGGAGcgGGAGCATTCGGGCcaGGgTT
  c         c    t  gcta  a  cact     gccc  cc ca    g  g tt   t c at  attg  tc 
                    a           a      a a                 a           t     a  
                                         t                                      
                                                                                

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *  **    *         *  * **                *   *                            *   
CACcCCaCCaCACGGaGGtCTTTTGGGGTGGAGCCCTCAGGCTCAGGGCATAtTgacAACagTGCCAGcAgctCCtCCTC
   t  t  g  t  caacg gc      c      g  at c  a   ccgc acacgact  t  at aaa  g    
      c  c     g  a                 a               a c  tc t          tg  a    
      g  t                                                  g                   
                                                                                

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                 * ** **          **  *             **          
CTGCcTCcACCAATCGgCAGTCAGGAAGaCAGCCtACtCCcaTcTCTCCACCTcTaAGAgACAgTCATCCTCAGGCCATG
    ag tg       c   a    gc ga a  c  c  gc ga a     at gc gac  cc        a   gca
    t  a        t                 a     at a                  g               
                                  g     t  t                                    
                                                                                

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    *                                                          *  * ***  *      
CAGTGGAAcTCCACaACcTTCCACCAAgCTCTgCaAGAtCCCAGaGTgAGgGGCCTgTAtTTtCCTGCTGGTGGCTCCAG
       ct  a gcgaa  t tt   a ct tttg  c  a aga c aa ct -a--cc c              a c
           t  t  t              a              a        ta --                   
                 g                                      -                       
                                                                                

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
               ** *  **  *                          *     *    ** **  *  *     *
TTCaGGAACAGTAAACCCTGTTCCGAcTAcTGcCTCtCcCaTaTCGTCAATCTTCtCGAgGAcTGGGGACCCTGCaccGA
   c cggt acg g     c  aa actt  ta  aga tcc ta    c  caa   a  t         tgat  
          c c                     g                  g   c                ga  
                                                                            t   
                                                                                

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  ***   *  *    **       **    *****     *  *    ** **       ** *    **    * ***
ACATGGAGAaCAtcACATCAGGATTCCTAGGACCCCTgCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAgAATCCTC
 t        cag    c   c    cac      t    ca          ta       c        a       
                                                                                
                                                                                
                                                                                

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *  *  *      *          *  **   ***  *  ** *      *          *** * *  **  * ** 
ACAATACCgCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAaCacCCgtGTGTCtTGGCCAAAATTC
        aa                              g           aggtta aac     c         t
                                                      tac    g     g            
                                                        g    a                  
                                                                                

       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
****  **  * * **   * **  * *   *  ***   *     **    ** * **    *   *    ****   *
GCAGTCCCCAACCTCCAATCACTCACCAACCTCcTGTCCTCCAAcTTGTCCTGGtTATCGCTGGATGTGTCTGCGGCGTT
         t     g              gt       ag tc        c     t       a           
                                                      a                         
                                                                                
                                                                                

       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 * * **   **    *  *  *      *****   **  ** *  *  *    *** *     ****      * *  
TTATCATaTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGAcTAtCAAGGTATGTTGCCCGTT
       c       g                           a         g    t gc  g              g
                                                                                
                                                                                
                                                                                

       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 * *        *         * *  *        **  * **       ***        **             *  
TGTCCTCTAaTTCCAGGAtCaTCaACcACCAGCACGGGACCaTGCAgaACCTGCACGAcTcCTGCTCAAGGaAcCTCTAT
        gc        a ta g  t  a ctgta  ga c   cag       ta taa   ta g aac a      
                    c     a        c   t t                 c                    
                    g                                                           
                                                                                

       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    * **  *  *  * *   * ** *   *         **** ******** * ***    *   **** *    **
GTtTCCCTCcTGTTGCTGTACaAAACCTTCGGAcGGAAAcTGCACcTGTATTCCCATCCCATCATCcTGGGCTTTCGcAA
  a      t  c  t    tc      at   t     t     t                 g  t          g  
         a                                                        a          t  
                                                                                
                                                                                

      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     * ****     ** ** ** ********     * **  *   *    ** * *   *  **    *  **   *
aATtCCTATGGGAGTGGGCCTCAGcCCGTTTCTCcTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTT
g  a                 t  t         t          c     c                    cc      
                                  a                                             
                                                                                
                                                                                

      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**** *  **  ***  **     *  * **  *  * *     ***               ** *  **       *  
TCCCCCACTGTtTGGCTTTCAGTTATATGGATGATGTGGTATTGGGGGCCAAGTCTGTACAaCATCTTGAGTCCCTTTtT
       t   c       t  c   g t      c    tc       g  aa    gtcg  c   ag      
                                   a                                            
                                                                                
                                                                                

      1210      1220      1230      1240   
....:....|....:....|....:....|....:....|...
          *   ***       *   ****    *   * *
ACCgCTgTTACCAATTTTCTTTTGTCTTTGGGTATACATTTaA
g  t  a      c      gg     c    c      c g 
t                                          
                                           
                                           
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