HBVdb::Dataset - Hepatitis B Virus Database

Dataset for nucleotide sequence PreS1 of genotype RF

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        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                             *           *  *         *  *
ATGGgaggttggtcttccaaacctcgacaaggcatggGGacgAATCTTTCtgttccCAATCCTCTGGGATTCTTTCCCGA
------------------------------------- acaa  c ag  caccaga  c  c        tc c    g
     gct cctagaa agtc    tga     tg            c     a
              g  g        cg                   a
              c

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  **    *  *      *    *  *   *       *  ** ** *     *                 * *
tCAcCAGTTGGAcCCtGCgTTCggAGCcAACtCaaacAATCCaGATTGGGACtTCAAcCCcAACAAGGAtcacTGGCCaG
c  t        t  a  c  taa   a  ta cgca  c  c         c    t  gcta     cact     gc
               g  a                g                        a           a      a
                  t


       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                    *         *             **    *         *  *  *
AgGCaAAtcAGGTaGGAGcgGGAGCATTCGGGCcaGGgTTCACcCCaCCaCAcGGcGGtCTtTTGGGGTGGAGCCCTCAG
cc  cc ca    g  g tt   t c at  attg  tc    t  t  g  t  aaacg gc             g  a
a                 a                 a        c  c     g  a
t                                            g  t


       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   *                                                                     * ** **
GCTCAGGGCATAtTgacAACagTGCCAGcAgcaCCtCCTCCTGCCTCcaCCAATCGgCAGTCAGGAAGaCAGCCTACtCC
  c  a   ccgc acacgatt a   at aat  g        ag tg       c   at   gc ga a  c  c
            a c   c c          tg  a        t  a        t   g             a
                    g


       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
          **  *             **              *
caTcTCTCCACCTcTaAGAgACAgTCATCCTCAGGCCATGCAGTGGAAcTCCACaACcTTCCACCAAaCTCTgCaAGAtC
gc ga a     at gc gac  cc        a   g a       ct  t gcgaa  t tt   g    tttg  c
at a                    g                          a  t  t              a
t  t                                                     g


       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                       *  * ***  *                     ** *   *  *
CCAGaGTgAGgGgCCTgTAttTtCCTGCTGGTGGCTCCAGTTCaGGAACAGTaAACCCTGtTCcGAcTACTGcCTCtCcC
a aga c aa ct  a--cc c              a     c cggt acg g     c  aa ac t  t   aga
       a        t  --                             c c                       gt



       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
            *          ** **     *        ***   *  *     *       **      * *
aTATCGTCAATCTTcTCGAgGAcTGGGGACCCTGcaCcGAACATGGAGAaCAtcaCATCAGGAtTCCTAGGACCCCTGCT
tcc ta       caa   a  t        t  tgat   t       g  cag    c   c    c c      t
               g   c                ga                t



       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
         ** **       ** *    *     * *** *  *  *                 *  *    ***  *
CGTGTTACAGGCGGGGTTTTTCTTGTTGACAAgAATCCTCACAATACCgCAGAGTCTAGACTCGTGGTGGACTTCTCTCA
  ca          ta       c        a               aa




       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
** *      *          *** * *  **  * ** ****  **  * * **   * **  * *   *  * *
ATTTTCTAGGGGGAaCacCCgtGTGTCtTGGCCAAAATTCGCAGTCCCcAACCTCCAATCACTCACCAACCTCcTGTCCT
g           aggtta  ac     c           t        a  t     g            t gt
              t c    g     g
                g


       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
      **    ** * **    *   *    **     * * * **   *     *  *  *      *****   **
CCAAcTTGTCCTGGtTATCGCTGGATGTGTCTGCGGCGTTTTATCATaTTCCTCTTCATCCTGCTGCTATGCCTCATCTT
ag tc        c     t       a                  c       g
              a



       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
** *  *  *    *** *     * **      * *   * *        *         * *           *
CTTGTTGGTTCTTCTGGACTAtCAAGGTATGTTGCCCGTTTGTCCTCTAaTTCCAGGAtCaTCaACcACCAGCACgGGAC
   a         g    t gc  g              g        cc        a ta g  tg a  tgtc  ga
                                                g           c     a        a
                                                            g     g


       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* **       ***        **             *      * **  *  *  * *   * **     *
CaTGCAgaACCTGCACgAcTCCTGCTCAAGGAACCTCTATGTtTCCCTCcTGTTGCTGTACaAAACCTtCGGAcGGAAAc
c   cag       ta taa   t  g a c a        a      t  c  t    tc      at   t     t
t                 c                             a



       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  * * ******* ** ***        ***  *    **     * ** *     *  *  ** ** *****     *
TGCACcTGTATTCCCATCCCATCATCcTGGGCTTTCGcAAaATtCCTATGGGAGTGGGCCTCAGtCCGTTTCTCcTGGCT
     t                 g  t          g  g  a                 t  c         t
                          a          t                                    a



      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**      *    ** * *   *  *     *  **    ****    **  ***   *     *    **  *  * *
CAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTtTGGCTTTCAGTTATATGGATGATGTGGT
     c     c                    c              t   c       t  c   g t      c
                                                                           a



      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    **                 * *  **                    *   **        *   ****    *
ATTGGGGGCCAAGTCTGTACAaCATCTTGAGTCCCTTTtTACCgCTgTTACCAATTTTCTTTTGTCTTTGGGTATACATT
tc       g  aa    gtcg  c g   ag      a g  t  a      c      gg     c           c





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*
TaA
g