HBVdb::Dataset - Hepatitis B Virus Database

Dataset for nucleotide sequence P of genotype RF

[Download (right click)] [Download Frequencies (right click)] [Sequences] [Alignment]

        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                    *      *                **     *  * *
ATGCCCCTATCtTATCAACACTTCCGGAaACTACTGTTGTTAGACGAcGA------GGCAGGTCCCCTAGAAGAaGAACT
           c    c           g   tg    a      a a -gaccgat     a     c     c
                                g                g



        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* ***         **          *** **   *     *  *  *   ***       *    **        **
CCCTCGCCTCGCAGACGAAGgTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAATCTCAATGTTAGTATtCCTT
     a           c  a        a         c     a  ac    aca gtc c        a   c
                                                g         c



       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   * *  ** ***** *      * **    *  **          **       *   *    ***      *
GGACtCATAAGGTGGGAAAcTTTACtGGGCTTTATTCTTCTACtGTACCTgtCTTTAAtCCTgAgTGGcAAACtCCcTCt
    a  c        g  t  c  g  c  c  c  cg  t gact   tgt  c  ct  c t   at  ta  t  c
    g                       a  g           a  c   aa          a a   t    c  a
                                                   c            c        g


       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  *     **     *        *             **       *  ** **  *  * *      * **     *
TTTCCTcAcATtCATTTaCAggAgGAcATTaTtaAtAgATGTcAaCAaTtTGTaGGcCCtCTtACAGTtAATGAaAAaAG
     aa t  a   c ga cc aa t  cg cgca ag   g g  g ac  g  g  c  c  taaa  c  gtccc
      g a           a        gc ac c      a             a  g  a  c  c       tg
        g           t                                   t  a        g


       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     *     *  * *****  *  *  * *  **        * ** **    **     *  * **  * **    *
gAGatTaaAATTaATTATGCCTGCTAGgTTcTATCCtAAccTTACcAAATATTTGCCcTTgGAcAAaGGcATtAAACCgT
a  gc gc  c gg c     c  c  a  t tc  c ctggc  t     c  a  tc a  t  g  t  c     t
               a     a              a  gtca  a        t  a     g     g        c
                                       aaa                           a        a


       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* ** ** **        *    ***** **     *    *  **  *        *  **      *   *  * **
ATTATCCtGAacATgcAGTTAATCATTACTTCcAaACtAGaCAtTATTTACAtACTCTgTGGAAgGCtGGcATttTATAT
c     a  gt gctg           t  ta gg cc g  c     g  c  ct a     a  g  tg cc
       c  ta ca                      g                    t        a  g  a
       g                             a


       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
      *      *           *  * *  **  *     *    ****  *   *   **  *
AAgAGAGAaaCtACACgcAGCGCCTCATTTTGtGGGTCACCATATTCTTGGGAACAAGAgCTACAGCAtgggaggttggt
  a  g tgt at t at  t  t        c        t   a c         a t     t  ------------
           c  c  a     a                                                gct cct



       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                            ** *     *   *  * **    ** **   **
cttccaaacctcgacaaggcaTGGGGacgAATCTTTCtgttccCAATCCtCTGGGATTCTTtCCCGAtCAcCAGTTGGAc
-----------------------  acaa  c ac  caccag   c  c  a     tc c    gc  t        t
gaa agtc    tcaggt   g            g              a
tg  g        tg
c

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*     *      *     *       *  ** ****    **        *        * *       *       *
CCtGCgTTCggAGCcAActCaaacAATCCAGATTGGGACtTCAAcCCcaACAAGGAccacTGGCCaGAgGCcAAccAGGT
  a  a   aa   a  ta cgca     c         c    t  gcta  a  tact     gccct ac ta
  g  c                g                        a           a      a a
     t                                                              t


       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  *    **        *             **    *         *  * **          *     *
aGGAGcgGGAGCATTCGGGCcaGGgTTCACcCCaCCaCAcGGcGGtCTtTTGGGGTGGAGCCCTCAGGCTCAGGGCaTAt
g    tt   t c at  a tg  tc   tt  t  g  t  aaacg gc             g  at a  a  tccgc
      a              c  a     a  g  c     g  a                              g  a
                                 c  t


       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                        *             *                     * *  **       *  **
TgacAACagTGCCAGCAgctCCtCCTCCTGCCTCcACCAATCGgCAGTCAGGAAGaCAGCCTACtCCcaTcTCTCCACCT
acacgatt at  at aaa  g        t  tg       c   gtc  gc ga a  a  c  gc ga       a
c  tt c          tg  a        a  a        t   a             c     at a
       g                                                           tg t


       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*           * **  *          **
cTaAGagACAgTCATCCTCAGGCCATGCAGTGGAAcTCCACaACcTTCCACCAAaCTCTgCaAGATCCCAGaGTgAGaGg
t gc gac  cc     a  a   g aa       t  t gcgat  t tt   g    t tga c  a ag  c ag c
           g                          a  t  a              a        g     a
                                            g


       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
          * ** ***  *       *              *    **  *     *           *        *
cCTgTAtTTcCCTGCTGGTGGCTCCAGTTCAGGAACAGTaAaCCCTGtTCcGAcTACTGcCTCTccCATATCGTCAATCT
t  a--cc-t              a     c ag t ccg g     c  aa ac t  ta  aga tcc ta    c
   t  --                               c                        tt
   -                                                            a


      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
          ** **  * **        ***   *  *   ****  *   **    *****    **       * **
TcTCGAgGAtTGGGGACCCTGcgCcGAACATGGAGAACATCaCATCAGGAtTCCTAGGACCCCTGCTCGTGTTACAGGCG
cagt  a  c     g  t  taat   t       g  cag        c     a       t    c
      c                 a               tt



      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* **    ** ***          * *    *  *    * *              *  ***   *  ** **   * *
GGGTTTTTCTTGTTGACAAgAATCCTCACAATACCgCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGG
          c        a               aa                  t           g           a




      1210      1220      1230      1240      1250      1260      1270      1280
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
         ***** ** ** ** **  ***  **  * *  *   ****  * **  *  *** ***     **    *
AaCtaCCGtGTGTCtTGGCCAAAATTCGCAGTCCCcAAcCTCCAaTCACTCACCAACCTccTGTCCTCCAAcTTGTCCTG
ggtac  ac     c           t        a  t     g            t gt       ag t
tac          g
   g


      1290      1300      1310      1320      1330      1340      1350      1360
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* ****    *   *   *****   * * *  *   ***   * **  *        ***** *   **    * **
GTTATCGCTGGATGTGTCTGCGGCGTTTTATCATaTTCCTCTtCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTT
c     t       a                  c       g                           a




      1370      1380      1390      1400      1410      1420      1430      1440
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  *** *       **  *  *  *   * *                    *  *        **  * ***      **
CTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAaTTCCAGGAtCtTCAACcACCAGCACgGGACCcTGCAgaACCTG
g    t  c  c              g        gc        a aa g  a  a  t  c   a a   cag
           g                       c           c     t        a   t
                                               g


      1450      1460      1470      1480      1490      1500      1510      1520
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*        **           * *  *     *** ** ** ***    **     **   * **  ** * *******
CACgACTCCTGCTCAAGGAACCTCTATGTaTCCCTCcTGTTGCTGTACAAAACCTtCGGAcGGAAAtTGCACCTGTATTC
   a t a      g aac a    t   t      a     t     c      at   t     c     t
                                    t



      1530      1540      1550      1560      1570      1580      1590      1600
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
****** *   * * ** ***   **     **** *    *** *  ** ** *****    ** ** **   *
CCATCCCATCATCcTGGGCTTTCGgAAAATtCCTATGGGAGTGGGCCTCAGcCCGTTTCTCtTGGCTCAGTTTACTAGTG
          g  t          c  g  a                    t         c          c     c
             a                                               a



      1610      1620      1630      1640      1650      1660      1670      1680
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  * * ***  *    **   *   ***
CCATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTtTGGCTTTCAGTTATATGGATGATGTGGTaTTGGGGGCCAAG
                   c                  c       t  c            a    tc       g  a
                                                              c



      1690      1700      1710      1720      1730      1740      1750      1760
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                    ** ****    **  * *        *
TCTGTACAgCATCTTGAGTCCCTTTtTaCCGCTGTTACCAATTTTCTTTTGTCTTTGGGTATACATTTaAACCCTaAcAA
a    gtca  c g   ag      a g  t  a                    c    c      c g  ta cc t




      1770      1780      1790      1800      1810      1820      1830      1840
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**         ***  *     *  * *  *   * **    ** **       **       ** **    **
AACaAAaaGaTGGGGtTAtTCcCTtaAcTTcATGGGaTATgTaATTGGaaGTTggGGtaCtTTgCCaCAggaaCAtATtg
g  c  gc t     c  c  tt ac t  t     c  ca c     gt c at  at ac a  g  atct  c  ca
   t     g     a        g           t     t     cg       c  c     c   a c
                        c           g           t        g  g           g


      1850      1860      1870      1880      1890      1900      1910      1920
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     *     *     *  **     *  * **        *     *    ****      * **     *    *
TACaaAAAATCAAacaaTGTTTtaGaAAAcTtCCTGTaAAcAGgCCTaTTGATTGGAAAGTaTGTCAAcGAATTGTGGGT
ggttc  gc t  ggtg     cc g   t g  ca tc tc a  cg          g  c  c  ga t  aaca  c
c  gg   t g   act              c     c        a              g        g     t  a
    t         t c              a                             t        c


      1930      1940      1950      1960      1970      1980      1990      2000
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    * ** ** *     ** ** ** *  ** ** *   * **  *    **    **        *
CTTtTGGGcTTTGCtGCcCCTTTtACaCAATGTGGaTATCCTGCtTTaATGCCtTTaTATGCATGTATaCAAtCtAAgCA
  gc a  t  c  c  t  c  c  g        t  c  a  cc gca   c  g     c     t  gg cc a t
        g     a  a  a     t        c        a                 g     c     a
        a                 c        g        g                             g


      2010      2020      2030      2040      2050      2060      2070      2080
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  **    ** *        ** *                 *  **       **
GGCTTTcACtTTCTCGCCAACTTAcAAGGCCTTTCTgtGTAAACAaTAtcTGAACCTTTACCCCGTTGCcCGGCAACGGc
a     t  a  t    t      t  aa    c  aaacccc  g  ca  cc               ta        t
         c                          cc           t



      2090      2100      2110      2120      2130      2140      2150      2160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                             ** * *       ***                             **
CaGGTCTgTGCCAAGTGTTTGCTGAcGCAACCCCCACTGGcTGGGGCTTGGcCATaGGCCATCaGCGCATGCGTGGAACC
t     c        a        t              a          ttt g       gc   c    c  g
c     a                                t           a  t
       t                                               c


      2170      2180      2190      2200      2210      2220      2230      2240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*      *         * *** *  *            *    ** *  *     * *  *   **           *
TTTgtGgCTCCTCTGCCGATCCATACtGCGGAACTCCTAGCcGCTTGTTTTGCTCGCAGCcGGTCTGGaGCaAAacTcaT
  cca t    gt a           c     g     g  a  c     c         a   t   g  gccca tc
   tc                                    t                                gg a
   a                                     g                                   g


      2250      2260      2270      2280      2290      2300      2310      2320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**  * ** **     * ** **          *  **  * *  ** * *  * * *         *     **
CGGgACtGAcAAcTCTGTtGTcCTctCcCGcAAaTAtACaTCcTTTCCATGGCTGCTAGGcTGTGCTGCCAACTGGATCC
t  t  c  t  t  c  c  t  tg t  g  g  c  c  g ac           c  g   a             t
   a  g           g  g  a  g  a           a                 a
   c                       a  t           t                 t


      2330      2340      2350      2360      2370      2380      2390      2400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   * *  *  *    *       ***  *         * ** ** *  *  ** *   * *        *
TGCGCGGGACGTCCTTTGTtTACGTCCCGTCGGCGCTGAATCCcGCGGACGACCCgTCtCGGGGcCGcTTGGGaCTCTac
t  a  a           c        c  at          t           t  c  a  t  tc    gact ct
a                                         a           c  g              t  g g
                                                       a                      t


      2410      2420      2430      2440      2450      2460      2470      2480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
       *                *            *  *  *    *  *  *  * *   *     *  ****
CGtCCcCTTCTtcgtCTGCCGTtCCGgCCGACCACGGGGCGCACCTCTCTTTACGCGGtCTCCCCGTCTGTGCCTTCTCA
  c  g  c  ctact att  at aa  ac  t       a                a        t   t       g
     t  g  g t   c       tc                               c
             c            t


      2490      2500      2510      2520      2530
....:....|....:....|....:....|....:....|....:....|....:...
     **      *  *   *     *  ** *           **   ** **  **
TCTGCCGGaCCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAgACCACCGTGA
c       t                              ta     ca   g  a
        c
        g