HBVdb

Dataset for nucleotide sequence P of genotype RF

[Download (right click)] [Download Frequencies (right click)] [Sequences] [Alignment]

        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                              **
ATGCCCCTATCtTATCAACACTTCCGGAaACTACTGTTGTTAGAC------GA------c------GAG------GCAGG
           c    c           g   tg a  a     t      a cgggaca        t           
                                g           g                                   
                                                                                
                                                                                

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     *            *   *         *            *   *            *       **       *
TCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAGgTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAATC
a     c     c          a           cc a        a         c        ac     ca gtc 
                                                                  g         c   
                                                                                
                                                                                

       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    **         * **    ** *  *  **       **        * *           **       *   * 
tCAATGTTAGTATcCCTTGGACTCATAAGGTGGGaAAcTTTACtGGgCTTTATTCTTCTACTGTACCTgTCTTTAAtCCT
c        a   t  c     a  c        g  t  c  g  t  g  c  cg ct gacc   tgt  c  ct  
             a  g     g                    c  a        a     a  t   a           
                                              c                                 
                                                                                

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    *        *    ** **     * *            *             **       *  **  * **   
gAgTGGcAAACtCCcTCtTTTCCTaAcATtCATTTaCAggAgGAcATTATtaAtAgaTGTcAACAaTtTGTgGGcCCtCT
c t   a   ta  ta c     ac t  a  c  gagcc aa t  cg cgca ag  cg g  g    g  at 
a a        c  a        cg a  c        t         c ac c      a             t  g  
  c        g              g           a                                      c  
                                                                                

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
        * *      *     *     *  * *****  *  * ** *  **          *  **     *    *
tACAGTtAATGAaAAaAGgAGatTaaAATTaATtATGCCTGCTAGGTTcTATCCtAAccTTACcAAATATTTgCCcTTgG
c  ta c  c  g  cc ac gc gc cc gg c       a  t tc  a ctggc  t  g  c  a  ac a 
g     a        g           g     a                  c  gtc   a        t  t    
      g                                                  aaa                    
                                                                                

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* ** **  * **     * *  **           **   * *** **     *    *  *** *           **
AcAAaGGcATtAAACCtTATTATCCtGAacAtgcAGTTAATCATTACTTCcAAACtAGgCAtTATTTACAtACTCTgTGG
 t  g   c     g  c     a  gt cct            t  ta gg cc a  c     g  c  ct a   
        a     a        g  ta ga                      g                    t   
              c        c                                                      
                                                                                

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
          *  * **       *      *           *    *  **        *     * ** *       
AAGGCtGGcATtcTATATAAGAGAGAAaCtACACgcAGCGCCTCATTTTGtGGGTCACCATATTCTTGGGAACAAGAgCT
c a  g  tg at       a  g tgt at t at  t  t     c ac        t   a c         a ta 
     a  g                  c  c  a     a                                      
                                                                                
                                                                                

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**                                                                              
ACA---------------GCATGG--------------------------GaggttggtcttccaaacctcgacaagGC-
  g               t   --                          --------------------------- - 
                                                   gct cct gaa agcc    tga gt   
                                                            c  g t      cg      
                                                            g           t       

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                        *  *         *  *       
--------------------------------AtggggacgAATCTTTCtgttccCAATCCTCTGGGATTCTTTCCCGAt
  tttcttggacggtccc ctcgaatggggga--------a  c ag  caccaga  c  c  a     tc c    gc
                                     a a      a     a                          a
                                                                                
                                                                                

       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
** **    *  *      *    *  **  *       *  ** ****     *                 * *     
CAcCAGTTGGAcCCtGCgTTCgGAGCcAACtCaaacAATCCAGATTGGGACTTCAAcCCCAACAAGGAtcacTGGCCAGA
  t        t  a  c   aa   a  ta cgca  c  c         c    t  gcta  a  cact     gcc
              g  a              t g   a                    a           a      a 
                 t                                                              
                                                                                

       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
          *   *    **        *          *  **    *         *  * **              
gGCcAAtcAGGTAGGAGcgGGAGCATTCGGGCcaGGgTTCACcCCaCCaCACGGaGGtCTTTTGGGGTGGAGCCCTCAGG
c  ac ca    g  g tt   t c at  attg  tc    t  t  g  t  caacg gc             g  at
a                 a           t     a        c  c     g  a                 a    
t                                            g  t                               
                                                                                

       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  *   *                                                 **                      
CTCAGGGCATAtTgacAA---------------------CagTGCCAGcAgctCCtCCTCCTGCcTCcACCAATCGgCAG
 c  a   ccgc acacg                     act  t  at aaa  g        ag tg       c   
           a c  tc                      t          tg  a        t  a        t   
                                        g                                       
                                                                                

       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
             * ** **          **  *             **              *               
TCAGGAAGaCAGCCtACtCCcaTcTCTCCACCTcTaAGAgACAgTCATCCTCAGGCCATGCAGTGGAAcTCCACaACcTT
a    gc ga a  c  c  gc ga a     at gc gac  cc        a   gca       ct  a gcgaa  
              a     at a                  g                          t  t  t  
              g        t                                                     g  
                                                                                

      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                           *  * ***  *                     ** * 
CCACCAAgCTCTgCaAGAtCCCAGaGTgAGgGGCCTgTAttTtCCTGCTGGTGGCTCCAGTTCaGGAACAGTAAACCCTG
t tt   a ct tttg  c  a aga c aa-ct--a--cc-c              a c   c cggt acg g     
            a              a  - --  ta --                             c c       
                                    -                                           
                                                                                

      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 **  *     *                    *     *    ** **  *  *        ***   *  *    **  
TTCCGAcTAcTGcCTCtCcCaTaTCGTCAATCTTCtCGAgGAcTGGGGACCCTGCaccGAACATGGAGAaCAtcACATCA
c  aa actt  ta  aga tcc ta    c  caa   a  t         tgat   t        cag    c
              g                  g   c                ga                      
                                                        t                       
                                                                                

      1210      1220      1230      1240      1250      1260      1270      1280
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     **    *****     *  *    ** **       ** *    **    * *** *  *  *      *     
GGATTCCTAGGACCCCTgCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAgAATCCTCACAATACCgCAGAGTCTAGA
   c    cac      t    ca          ta       c        a               aa          
                                                                                
                                                                                
                                                                                

      1290      1300      1310      1320      1330      1340      1350      1360
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     *  **  ****  *  ** **     *          ***** *  **  * ** ****  **  * * **   *
CTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAaCacCCgtGTGTCtTGGCCAAAATTCGCAGTCCCCAACCTCCAATC
                    g           aggtta aac     c         t         t     g  
                                  tac    g     g                                
                                    g    a                                      
                                                                                

      1370      1380      1390      1400      1410      1420      1430      1440
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 **  * **  *  ***   *     **    ** * **    *   *    ****   * * * **   **    *  *
ACTCACCAACCTCcTGTCCTCCAAcTTGTCCTGGtTATCGcTGGATGTGTCTGCGGCGTTTTATCATaTTCCTCTTCATC
            gt       ag tc        c     t       a                  c       g    
                                  a                                             
                                                                                
                                                                                

      1450      1460      1470      1480      1490      1500      1510      1520
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  *      *****   **  ** *  *  *    *** *     ****      * *   * *        *       
CTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGAcTAtCAAGGTATGTTGCCCGTTTGTCCTCTAaTTCCAGGAtC
                       a         g    t gc  g              g        gc        a 
                                                                                
                                                                                
                                                                                

      1530      1540      1550      1560      1570      1580      1590      1600
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  * *  *        **  * **       ***        **             *      * **  *  *  * * 
aTCaACcACCAGCACGGGACCaTGCAgaACCTGCACGAcTcCTGCTCAAGGaAcCTCTATGTtTCCCTCcTGTTGCTGTA
ta g  t  a ctgta  ga c   cag       ta taa   ta g a c a        a      t  c  t    
    a        c   t t                 c                             a          
                                                                              
                                                                                

      1610      1620      1630      1640      1650      1660      1670      1680
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  * ** *   *         **** **************    *   **** *    **     * ****     ** *
CaAAACCTTCGGAcGGAAAcTGCACcTGTATTCCCATCCCATCATCcTGGGCTTTCGcAAaATtCCTATGGGAGTGGGCC
tc      at   t     t     t                 g  t          g  g  a                
                                              a          t                      
                                                                                
                                                                                

      1690      1700      1710      1720      1730      1740      1750      1760
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* ** ********     * **  *   *    ** * *   *  **    *  **   ***** *  **  ***  ** 
TCAGcCCGTTTCTCcTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTtTGGCTTTC
 t  t         t          c     c                    cc             t   c       t
              a                                                                 
                                                                                
                                                                                

      1770      1780      1790      1800      1810      1820      1830      1840
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    *  * **  *  * *     ***               ** *  **       *            *   ***   
AGTTATATGGATGATGTGGTATTGGGGGCCAAGTCTGTACAaCATCTTGAGTCCCTTTtTACCgCTgTTACCAATTTTCT
  c   g t      c    tc       g  aa    gtcg  c   ag      a g  t  a      c      
               a                                            t                   
                                                                                
                                                                                

      1850      1860      1870      1880      1890      1900      1910      1920
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    * * ****    *   * *   *       **         ***  *           * *   * **    ** *
TTTGTCTTTGGGTATACATTTaAACCCtaAcAAAACcAAaaGaTGGGGtTAcTCccTtaAcTTcATGGGaTATgTaATTG
gg     c    c      c g  ta ccct  g  a  gc t      t  tt ac t  t     t  ca c    
                         t a        t     g            g           c     g    
                                    g                    c           g          
                                                                                

      1930      1940      1950      1960      1970      1980      1990      2000
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
         *        ** *     *           **             **    *   * **        * * 
GaaGTTggGGtaCtT-TaCCaCAaGAaCAtATtgTACaaAAAaTCAAacAaTGTTTtaGaAAAcTgCCTGTaAAtAGgCC
 gt c at  atgac  g  g  gact  c  cagcttc  gc t gggtc  c  cc g   t t  ca tc cc a  
 t        g  c          t c       cg gg   t g   a g        c     c     c        
 c        c               g           t           t              a              
                                                                                

      2010      2020      2030      2040      2050      2060      2070      2080
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  * *  ***       * *     **    *        *  ** *     ** **    *  ** ** *  ** **  
TATTGATTGGAAAGTaTGTCAaaGaATTGTGGGTCTttTGGGcTTTGCtGCcCCtTTtACaCAATGTGGtTATCCTGCcT
cg c        g  g  c  gc t  ctca  c  cc a  t  c  c  t  a  c  g  g     c  c  a  tc
             c        g  aa t  a  g     g        a  c     t        a        
                        c        g  a     a                 c        g        
                                                                                

      2090      2100      2110      2120      2130      2140      2150      2160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*    **  * *   *     *             ** **     * *        **                   *  
TaATGCCtTTaTATGCATGTATaCAAtCtAAgCAGGCTTTcACTTTcTCGCCAACTTACAAGGCCTTTCTgTGTAAACAA
 gca    g     c     t  gg c ga  a     t  a  t   t   tg  t  aatt  ct aaacc    g
              g     c  c  a              g           a              cc        
                         t  g              c                                    
                                                                                

      2170      2180      2190      2200      2210      2220      2230      2240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**       **                                                     * * *      *** *
TAtcTGAACCTTTACCCCGTTGCcCGGCAACGGtCaGGTCTgTGCCAAGTGTTTGCTGAcGCAACCCCCACTGGcTGGGG
  cac cc               ta        c t   g c                 t              a     
   t                             g c     t                                t     
                                   g     a                                      
                                                                                

      2250      2260      2270      2280      2290      2300      2310      2320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
          *               * **     *      **         **** *       *       *    *
CTTGGccATaGGCCATCagCGCATGCGTGGAACCTTTgtGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCaGCtT
     ttt g     c gc   c    g         ca t    gt a           c        g  g  c  c 
      ag t                 c         tc      a                       t  t  t    
         c                           ag                                    g    
                                                                                

      2330      2340      2350      2360      2370      2380      2390      2400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*    *       * **   **           *  *  * ** **        *                 *  * *  
GTTTTGCTCGCAGCcGGTCTGGaGCaAAacTtaTCGGgACtGAcAAcTCTGTtGTcCTcTCtCGgAAATAcACcTCcTTT
    c         a   t   g  g cca cc   c  t  t  c  c  t  tg c  c  g  t   g ac
                         t  gg g      g        a  g  g     g  a           a   
                                                           a  t           t   
                                                                                

      2410      2420      2430      2440      2450      2460      2470      2480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
** * *  *   *         *    ***    *  *       *           ** *            * ** **
CCATGGCTGCTaGGcTGTGCTGCCAACTGGATCCTgCGCGGGACGTCCTTTGTcTACGTCCCGTCGGCGCTGAATCCcGC
           c  g   a             tt  a  a  a        t        c  a  a        t  
              t                 a                                          a  
              a                                                              g  
                                                                                

      2490      2500      2510      2520      2530      2540      2550      2560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *  *  *  *   *                      *   *             *  *            *        
GGACGACCCgTCtCGGGGcCGcTTGGGacTCTacCGTCCcCTTCTtcgtCTGCCGTtCCGgCCGACCACGGGGCGCACCT
         t  c  c  t  tc    gact ct  c  t  ca ctact  tta at aa  at  t       a    
         c  g              t  g g      g  g  g t           tc   c               
         a                 c    t              c            t                   
                                                                                

      2570      2580      2590      2600      2610      2620      2630      2640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
        *  *  ** *     *  **          ***         *   *     * ***               
CTCTTTACGCGGtCTCCCCGTCTGTGCCTTCTCATCTGCCGGaCCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGG
                   t   t    t  g        t  a                           ta     
                   g                    g                                     
                                          c                                     
                                                                                

      2650  
....:....|..
            
AgACCACCGTGA
ca   g  a   
            
            
            
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