HBVdb

Dataset for nucleotide sequence P of genotype RF

[Download (right click)] [Download Frequencies (right click)] [Sequences] [Alignment]

        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                              **
ATGCCCCTATCtTATCAACACTTCCGGAaACTACTGTTGTTAGAC------GA------c------GAG------GCAGG
           c    c           g   tg    a     g      a cgggaca        t           
                                g                                               
                                                                                
                                                                                

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     *            *   *         *            *   *            *       **       *
TCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAGgTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAATC
a           c          a              a        a         c        a      catgtc 
                                                                            c   
                                                                                
                                                                                

       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    **         *       *  *  *  **        *        *             **       *   * 
tCAATGTTAGTATcCCTTGGACTCATAAGGTGGGAAAcTTTACtGGGCTTTATTCTTCTACtGTACCTgTCTTTAAtCCT
c        a   t  c     a  c        g  t  c  g  t     c  cg  t gacc   tg   c  ct g
             a  g     g                    c  a        a     a  t   a           
                                              c                                 
                                                                                

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    *        *    ** **     *              *             **       *  **  * **   
gAgTGGcAAACtCCcTCtTTTCCTcAcATtCATTTaCAggAgGAcATTaTtaAtAgaTGTcAACAaTaTGTaGGcCCtCT
c t   a   ta  ta c     aa t  a  c  gagcc aa t  cg cgca ag  cg g  g tc   g  at 
a a        c  a  a     cg a           t         c ac c      a             t  c  
  c        g              g           a                                   a  g  
                                                                                

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
        * *      *     *     *  * * ***  *  * ** *  **          *  **     *     
tACAGTtAATGAaAAaAGgAGAtTaaAATTaATTATGCCTGCTAGGTTcTATCCtAAccTTACcAAATATTTgCCcTTgG
c  ta c  c  g  cc ac gc gc cc gg c       a  t tc  a ctggc  t  g  c  a  ac a 
g     a        g           g     a                  c  gtc   a           t    
      g                                                  aaa                    
                                                                                

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  * **    **     * *  **           **   * *** **     *    *  *** *           **
AcAAaGGcATtAAACCtTATTATCCtGAacATgcAGTTAATCATTACTTCcAaACtaGgCAtTATTTACAtACTCTgTGG
  g  t  c     g  c     a  gt cct               ta gg cc a  c     g  c  ct a   
       g        a        c  ta ga                      g                    t   
       a        c        g                                                      
                                                                                

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
          *  * **       *      *           *    *  **        *     *  * *       
AAgGCtGGcATtcTATATAAGAGAGAAaCtACACgcAGCGCCTCATTTTGTGGGTCACCATATTCTTGGGAACAAGAgCT
c a  g  tg at       a  g tgt at t at  t  t     c ac        t   a           a t  
     a  g                  c  c  a     a                                      
                                                                                
                                                                                

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**                                                                              
ACA---------------GCATGG--------------------------GaggttggtcttccaaacctcgacaagGC-
                  t-----                          ---------------------------   
                                                       ccta a  a c      ga      
                                                            c           c       
                                                            g                   

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                        *  *         *  *       
--------------------------------AtggggacgAATCTTTCtgttccCAATCCTCTGGGATTCTTTCCCGAt
  tttcttggacggtccc ctc a tggggga -------a  c ag  caccaga  c  c        tc c    gc
                                       a      c     a                           
                                                                                
                                                                                

       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  **    *  *      *    *  *   *       *  ** ** *     *                 * *     
CAcCAGTTGGAcCCtGCgTTCggAGCcAACtCaaacAATCCaGATTGGGACtTCAAcCCcAACAAGGAtcacTGGCCaGA
  t        t  a  c   aa   a  ta cgca  c  c         c    t  gcta     cact     gcc
              g  a                g                        a           a      a 
                 t                                                              
                                                                                

       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                   *         *             **    *         *  *  *              
gGCaAAtcAGGTaGGAGcgGGAGCATTCGGGCcaGGgTTCACcCCaCCaCAcGGaGGtCTtTTGGGGTGGAGCCCTCAGG
c  cc ca    g  g tt   t c at  attg  tc    t  t  g  t  caacg gc             g  a 
a                 a                 a        c  c     g  a                      
t                                            g  t                               
                                                                                

       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  *                                                                             
CTCAGGGCATAtTgacAA---------------------CagTGCCAGcAgcaCCtCCTCCTGCCTCcaCCAATCGgCAG
 c  a   ccgc acacg                     att a   at aat  g        ag tg       c   
           a c   c                      c          tg  a        t  a        t   
                                        g                                       
                                                                                

       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
             * ** **          **  *             **              *               
TCAGGAAGaCAGCCTACtCCcaTcTCTCCACCTcTaAGAgACAgTCATCCTCAGGCCATGCAGTGGAAcTCCACaACcTT
at   gc ga a  c  c  gc ga a     at gc gac  cg        a   g a       ct  t gcgaa  
g             a     at a                    c                          a  t  t  
              g        t                                                     g  
                                                                                

      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                           *  * ***  *                     ** * 
CCACCAAaCTCTgCaAGAtCCCAGaGTgAGgGgCCTgTAttTtCCTGCTGGTGGCTCCAGTTCaGGAACAGTaAACCCTG
t tt   g    tttg  c  a aga c aa ct -a--cc c              a     c cggt acg g     
            a              a        t  --                             c c       
                                    -                                           
                                                                                

      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  *  *     *                    *          ** **     *        ***   *  *    **  
tTCcGAcTACTGcCTCtCcCaTATCGTCAATCTTcTCGAgGAcTGGGGACCCTGcaCcGAACATGGAGAaCAtcaCATCA
 aa ac t  t   aga tcc ta       caa   a  t        t  tgat   t        cag    c
                 t                 g   c                ga                t     
                                                                                
                                                                                

      1210      1220      1230      1240      1250      1260      1270      1280
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     **      * *             ** **       ** *    *     * *** *  *  *            
GGAtTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAgAATCCTCACAATACCgCAGAGTCTAGA
   c    c        t    ca          ta       c        a               aa          
                                                                                
                                                                                
                                                                                

      1290      1300      1310      1320      1330      1340      1350      1360
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     *  *   ****  *  ** *      *          *** * *  **  * ** ****  **  * * **   *
CTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAaCacCCgtGTGTCtTGGCCAAAATTCGCAGTCCCcAACCTCCAATC
                    g           aggtta  ac     c           t         t     g  
                                  t c    g     g                                
                                    g                                           
                                                                                

      1370      1380      1390      1400      1410      1420      1430      1440
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 **  * **  *  * *         **    ** * **    *   *    **     * * * **   *     *  *
ACTCACCAACCTCcTGTCCTCCAAcTTGTCCTGGtTATCGCTGGATGTGTCTGCGGCGTTTTATCATaTTCCTCTTCATC
          t gt       ag tc        c     t       a                  c       g    
                                  a                                             
                                                                                
                                                                                

      1450      1460      1470      1480      1490      1500      1510      1520
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  *      *****   **  ** *  *  *    *** *     * **      * *   * *        *       
CTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTAtCAAGGTATGTTGCCCGTTTGTCCTCTAaTTCCAGGAtC
                       a         g    t gc  g              g        cc        a 
                                                                    g           
                                                                                
                                                                                

      1530      1540      1550      1560      1570      1580      1590      1600
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  * *           *   * **       ***        **             *      * **  *  *  * * 
aTCaACcACCAGCACgGGACCaTGCAgaACCTGCACgAcTCCTGCTCAAGGAACCTCTATGTtTCCCTCcTGTTGCTGTA
ta g  tg a  tgtc  ga c   cag       ta taa   t  g a c a        a      t  c  t    
    a        a     t                 c                             a          
    g                                                                         
                                                                                

      1610      1620      1630      1640      1650      1660      1670      1680
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  * ** *   *          *** ******* ******        ***  *    **     * ** *     *  *
CaAAACCTtCGGAcGGAAAcTGCACcTGTATTCCCATCCCATCATCcTGGGCTTTCGcAAaATtCCTATGGGAGTGGGCC
tc      at   t     t     t                 g  t          g  g  a                
                                              a          t                      
                                                                                
                                                                                

      1690      1700      1710      1720      1730      1740      1750      1760
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  ** ** *****     * **      *    ** * *   *  *     *  **    ****    **  ***   * 
TCAGtCCGTTTCTCcTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTtTGGCTTTC
 t  c         t          c     c                                 t   c       t
              a                                                                 
                                                                                
                                                                                

      1770      1780      1790      1800      1810      1820      1830      1840
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    *    **  *  * *     **                 * *  **       *            *   **    
AGTTATATGGATGATGTGGTATTGGGGGCCAAGTCTGTACAaCATCTTGAGTCCCTTTtTACCgCTgTTACCAATTTTCT
  c   g t      c    tc       g  aa    g cg  c   ag      a g  t  a      c      
               a                                                                
                                                                                
                                                                                

      1850      1860      1870      1880      1890      1900      1910      1920
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    * * ****    *   *     *       **         ***  *             *   * **    ** *
TTTGTCTTTGGGTATACATTTaAACCCTaAtAAAACcAAacGaTGGGGcTAcTCcCTtaAcTTcATGGGaTATgTaATTG
gg     c           c g  ta cc c  g  a  ga t      t  tt ac t  t     c  ca c    
                         t a        t     g            g           t     g    
                                    g                    c           g          
                                                                                

      1930      1940      1950      1960      1970      1980      1990      2000
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
         *        ** *     *           **             **        * **        * * 
GaaGTTggGGtaCtT-TaCCaCAgGAaCAtATtgTACaaAAAaTCAAacAaTGTTTTcGaAAAcTgCCTGTaAAtAGaCC
 gt c at  gtgcc  g  g  atct  c  cagcttc  gc t gggtc  c  ca g   t t  ca tc cc g  
 tg       a  a      c   a c        g  g     g   a g        c     c     c        
 c        c               g           t           t              a              
                                                                                

      2010      2020      2030      2040      2050      2060      2070      2080
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  * *  ***       * *      *    *           ** *     ** **    *  ** ** *  ** **  
TATTGATTGGAAAGTaTGTCAaaGaATTGTGGGTCTTtTGGGcTTTGCtGCcCCtTTtACaCAATGTGGtTATCCTGCtT
cg c        g  c  c  gc g  ctca  c  cc a  t  c  c  t  a  c  g        a  c  a  cc
             g        t        a  g     g        a  c     t        c        
                        c        g        a                 c        g        
                                                                                

      2090      2100      2110      2120      2130      2140      2150      2160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*    **  * *   *     *             ** **       *        **                   *  
TaATGCCtTTaTATGCATGTATaCAAtCtAAgCAGGCTTTcACTTTCTCGCCAACTTACAAGGCCTTTCTgtGTAAACAa
 gca    g     c     t  gg cc a  a     t  a  t   t       t  aatt  ct aaacc c  g
                         c  a              g                          cc        
                         t  g              c                                    
                                                                                

      2170      2180      2190      2200      2210      2220      2230      2240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**       **                                                     * * *      *** *
TAtcTGAACCTTTACCCCGTTGCcCGGCAACGGtCaGGTCTcTGCCAAGTGTTTGCTGAcGCAACCCCCACTGGcTGGGG
  cac cc               ta        c t     g                 t              a     
   t                             g c     t                                t     
                                         a                                      
                                                                                

      2250      2260      2270      2280      2290      2300      2310      2320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                              *     *      **         **** *               *    
CTTGGccATaGG-CCATCagCGCATGCGTGGAACCTTTgtGgCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCaGCT
     ttg g      c gc   c    g         ca t    gt a           c        g  g  c  c
      at t                  c         tc      a                       t  t  t   
         c                            a                                         
                                                                                

      2330      2340      2350      2360      2370      2380      2390      2400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**    *       *  *    *           *  *  * ** **        *                 *  * * 
TGTTTTGCTCGCAGCcGGTCTGGaGCaAAacTtaTCGGgACtGAcAAcTCTGTtGTcCTcTCtCGgAAaTAcACcTCcTT
     c               g  g cca cc   c  t  t  c  c  t  tg c  c  g  t   g a
                             gg        g           g  g     g  a           a  
                                                            a  t           t  
                                                                                

      2410      2420      2430      2440      2450      2460      2470      2480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 ** * *  *   *         *    ***    *  *                    * *            * ** *
TCCATGGCTGCTaGGcTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTcTACGTCCCGTCGGCGCTGAATCCcG
c           c  g   a             t   a  a           t        c  at a        t 
               t                                                            a 
               a                                                                
                                                                                

      2490      2500      2510      2520      2530      2540      2550      2560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* *  *  *  *   *                      *   *             *  *            *       
CGGACGACCCgTCTCGGGGcCGtTTGGGacTCTacCGTCCcCTTCTtcgtCTGCCGTTCCGgCCGACCACGGGGCGCACC
          t  c  c  t  cc    gact ct  c  t  c  ctac  atta at aa  at  t       a   
          c  g              t  g g      g     g t            c   c              
          a                 c    t              c            t                  
                                                                                

      2570      2580      2590      2600      2610      2620      2630      2640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
         *  *  ** *     *  **           **         *   *     *  **              
TCTCTTTACGCGGtCTCCCCGTCTGTGCCTTCTCATCTGCCGGaCCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATG
                    t           g        t                              ta    
                    g                    g                                    
                                           c                                    
                                                                                

      2650   
....:....|...
             
GAgACCACCGTGA
 ca   g  a   
             
             
             
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