HBVdb

Dataset for nucleotide sequence PreS1 of genotype F

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        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
***********    **  *     **** ** * * *    *****  * ** ***** ** ***** *** * **  *
ATGGGAGCACCTCTcTCAACGACacGAAGgGGCATGGGACaGAATCTcTCTGTgCCCAATCCtCTGGGaTTCTTtCCAGA
              a        ta    a          t          a        a     c   c g   r 
                       g                                      g                 
                                                                                
                                                                                

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 ** **  *******  * ****   ***** *** **   * ** *****  ******    ******    *******
CCATCAGCTGGATCCtCTaTTCAGgGCAAATTCCAGCAGTCCCGAcTGGGACTTCAACAaAAACAAGGACAaTTGGCCAA
a      t        t    aa                    t             c gc        c        
                                                                       g        
                                                                                
                                                                                

       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  * ***** **  *      **     *   * **  * *  ** *           ** ** *** *  * ** * *
TGGCAAACAAGGTAGGA---GTGGGAGGaTACGGTCCaGGGTTCACACC---CC---caCACGGTGGCCTGtTGGGGTGG
                         g ct     c      t       c -ca --         t  c    a   
                            c                           t                     
                                                                                
                                                                                

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
** ** *  ** ** **     *  * **   * **    * ** ***    *  *********           *   *
AGcCCtCAGGCACAgGGTGTgcTaACAACcTTGCCAGCAGATCCGCCTCCTGCTTCCACCAATCGGCGGTCCGGGAGaAA
  t  a  a     a   a tt     a       tga    a        cc           a aa g  a  g  
                                                                              
                                                                              
                                                                              

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
              * * *    * *  ** ** ** ** **             *   *       ** **        
gCCAACCCCAGTCTCTCCACCTCTAAGAGACACaCATCCACAGGCcATGCAGTGGAACTCaACcCAGTTCCACCAGGCtC
a                                t           ag a  a     ta ct t     t  t  aa ct
                                 c                                              
                                                                                
                                                                                

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
              *                   **** *    * ** * *    **      ** ** **  * ****
TGTTaGATCCgAGGGTAAGGGCTCTGTATtTtCCTGCTGGTGGCTCCAGTTCAGaGACaCAGAACCCTGCTCCGACTATT
    g  c  c aa    a    -----cc-c                      ga  g  a       t          
          a                g-- -                                                
                                                                                
                                                                                

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*   * *  * *** ****  *    **  * *** * ** **     * **  ** * *      **   ** **    
GCCTCTCTCACATCATCAATCTTCTcGAAGACTGGGGGCCCTGCtAtGAACATGGAcAACATCACATCAGGACTCCTAGG
   y    t           c  t         c  t   c c         g g  ctt         a    a 
                      a              a      a                                   
                                                                                
                                                                                

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**  ** * *   * *   * ** *  *  **  *  * **   *** ** **  ***   *  **  *** ** *****
ACCCCTGCTCGTGTTACAGGCGGTGTGTTTCTTGTTGACAAAAATCCTCACAATACCACAGAGTCTAGACTCGTGGTGGA
                          t  c      t        g  a   g    g                    
                          c                                                     
                                                                                
                                                                                

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 ***** ** ****** * *     * *   ***** ** ******  * * *********************** ****
CTTCTCTCAATTTTCTAGGGGGActACCCGGGTGTCCTGGCCAAAATTCGCAGTCCCCAACCTCCAATCACTTACCAACC
         g        a  a ac   a                                                   
                     r                                                          
                     c                                                          
                                                                                

       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  *******  * ***** **  ***** * *  ** ** ** ***** ****** ******* *********** ** 
TCCTGTCCTCCAACTTGTCCTGGCTATCGtTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATG
                       t     c                                                  
                                                                                
                                                                                
                                                                                

       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
***** **************** **** *     ***** ******** ***** *        *               
CCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAcTTCCAGGATCcACGACCA---
                      g       c  g                        a          tt a   -   
                                                                                
                                                                                
                                                                                

       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
         *** *** ***   ****   **** **  ** **** * *   ** * **** * ***** ** ** ***
---------CCAGCACGGGACCaTGCAAAACCTGCACAACTCTTGCTCAAGGAACCTCTATGTTTCCCTCcTGtTGCTGT
        a             c     g               a     c                 t  c  t   
                                                                      a         
                                                                                
                                                                                

       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 * * *** * *** ***** ***** *********** ***** **   ** *** ***** * ********  ** * 
TCcAAACCcTCGGACGGAAACTGCACtTGTATTCCCATCCCATCATCtTGGGCTTTAGGAAAATACCTATGGGAGTGGGC
a a     t                 c                    c                                
  m     y                                                                       
                                                                                
                                                                                

      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
****  ** ** *** * ***** **** ** ***  *  ** ***** * **  * * ********* *** **** **
CTCAGCCCGTTTCTCCTGGCTCAGTTTACTAGTGCAATTTGTTCAGTGGTGCGTAGGGCTTTCCCCCACTGTcTGGCTTT
             t       a                              c             t   t       
               a       k                                                        
                                                                                
                                                                                

      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     *    **** ************ ** *** *    *   * *  **  *  * **  *   * ** * *****  
TAGTTATATGGATGATCTGGTATTGGGGGCCAAATCTGTGCAGCATCTTGAGTCCCTTTATACCGCTGTTACCAATTTTC
       g                               t  a  c                                 t
                                                                                
                                                                                
                                                                                

      1210      1220    
....:....|....:....|....
*  ****  ****  ** *  * *
TGTTATCTGTGGGTATCCATTTaA
        t             g 
                        
                        
                        
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