HBVdb

Dataset for nucleotide sequence Genomes of genotype F

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        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
          ** **                *     *                   **** *    * ** * *    *
CTCaACcCAGTTCCACCAGGCtCTGTTaGATCCgAGGGTAAGGGCTCTGTAttTtCCTGCTGGTGGCTCCAGTTCAGaGA
ta ct ta    t  t  aa ct    g  c  c aa    a     ---gcc-c-                    aga 
                                 a                ---c-                       c 
                                                  c                             
                                                                                

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* *    ** ** ** ** *****   * *  * *** ****  *    **  ***** * ** **     * ** *** 
CaCAGAACCCTGCTCCGACTATTGCCTCTCTCACATCATCAATCTTCTcGAAGACTGGGGGCCCTGCtAtGAACATGGAc
 g  a       t             y    t           c  t         c  t  tc c         g
                                             a  y           a      a y          
                                                                                
                                                                                

       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* **     **   *  **    **  ** * **  * *   * ** *  *  ** **  * **   *** ** **  **
AACATCACATCAGGACTCCTAGGACCCCTGCTCGTGTTACAGGCGGTGTgTTTCTTGTTGACAAAAATCCTCACAATACC
 g  ctt         a    a                     g  g  t  c  c     t  g     g  a   g  
                                                 c                              
                                                                                
                                                                                

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    *  **  *** ** *********** ** ****** * *     * *   ***** ** ********* * *****
ACAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGActACCCGGGTGTCCTGGCCAAAATTCGCAGTCCC
  g                           g        a  a ac   a r                          
                                            c                                   
                                            r                                   
                                                                                

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
****************** *****  *******  * ***** **  ***** * *  ** ** ** ***** ****** 
CAACCTCCAATCACTTACCAACCTCCTGTCCTCCAACTTGTCCTGGCTATCGtTGGATGTGTCTGCGGCGTTTTATCATC
                         t                    t     c                           
                                                                                
                                                                                
                                                                                

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
******* *********** ******** **************** **** *     ***** ******** ***** * 
TTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCT
                                             g       c  g                       
                                                                                
                                                                                
                                                                                

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                            * *   **** *** ***   ****   **** **  ** **** * *   *
AcTTCCAGGATC------------cACGACC---ACCAGCACGGGACCaTGCAAAACCTGCACAACTCTTGCtCAAGGAA
 a----------            tt a a ggg            g c     g               a     c 
 -                      -                                                       
                        a                                                       
                                                                                

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* * **** * ***** ** ** *** * * *** * *** ***** ***** *********** ***** **   ** *
CCTCTATGTTTCCCTCcTGtTGCTGTTCcAAACCcTCGGACGGAAACTGCACtTGTATTCCCATCCCATCATCtTGGGCT
                t  c  t   a a     t                 c                 g  c      
                a           m     y                                             
                                                                                
                                                                                

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
** ***** * ********  ** * ****  ** ** *** * ***** ***********  *  ** ***** * ** 
TTAGGAAAATACCTATGGGAGTGGGCCTCAGCCCGTTTCTCCTGGCTCAGTTTACTAGTGCAATTTGTTCAGTGGTGCGT
                                       t       a                              
                                         a       k                              
                                                                                
                                                                                

       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 * * ********* *** **** ***    *    **** ************ ****** **   *   * *  **  *
AGGGCTTTCCCCCACTGTcTGGCTTTTAGTTATATGGATGATCTGGTATTGGGGGCCAAATCTGTGCAGCATCTTGAGTC
c             t   t    y    s    g                          a    t  a  c        
              y                                                  a              
                                                                                
                                                                                

       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  * **  *   * ** * *****  *  ****  ****  ** *  * **  *  * ** ** **  * ***** **  
CCTTTATACCGCTGTTACCAATTTTCTGTTATCTGTGGGTATCCATTTaAATACcTCtAAAACAAAAAGATGGGGTTAca
                         t        t           g   g tg g     g  gc       c  tt
                                  c                            t                
                                                                                
                                                                                

       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   *  * ** *****  *    ** **  ***  **  * ** ** **  * ** ***   *  **  * *     *  
cccTAcATTTcATGGGTTATGTtATTGGcAGTTGGGGAtCaTTACCcCAAGATCAcATTGTACAcAAAaTCAAAGAtTGt
att ca c  t       a c             g g  g  a     c  t   a t  a  gc   rg  a  c
 a                  a             a       t                 t           c   
                                      y                                         
                                      r                                         

       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**    *** * *****    ** **  * ** ***** ** ** **  *  * ** **  *  ***  ***** ** * 
TTTcGtAAACTTCCTGTAAATCGtCCaATTGAtTGGAAAGTTTGTCAaCGcATTGTGGGtCTTTTGGGCTTTGCcGCcCC
   a a     g           c   a  c        c  c    a       c          t  t  
     g                 a               a                                g     
                                                                        a     
                                                                                

      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *   * ***** ** ** **************  *  *    ** ** *  ** **  * ** ***** ** ****  *
tTTtACcCAATGTGGTTATCCTGCTCTCATGCCTcTGTATgCCTGTATaACTGCtAAACAGGCTTTTGTCTTTTCGCCAA
c  c  t     c                     t  caat     t  c  g        g     t  c       
      a                                 r m     c     a        c                
                                                                                
                                                                                

      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* ** **  ***** *       ** ***    ********** ***    ******** * *** * ************
CTTACAAGGCCTTTCTaTGTaAACAaTACATGAACCTTTACCCCGTTGCTCGGCAACGGCCAGGCCTGTGCCAAGTGTTT
 c      a       c   c    g   gctc                ca        t g                  
 a              g                                            t                  
                t                                                               
                                                                                

      1210      1220      1230      1240      1250      1260      1270      1280
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
***** ** ** **** *** ****** * *   * ** ** ******  *** *   *****  ******  * *****
GCTGACGCAACCCCCACTGGTTGGGGCTTGGCCATTGGCCATCAGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGAT
     t     t        c                                                     a     
                                                                                
                                                                                
                                                                                

      1290      1300      1310      1320      1330      1340      1350      1360
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
** * * ** **  **   *  ** ** ** *** ** *  *** ***  *     * *  ** ** *     ** *  *
CCATACTGCGGAACTCCTTGCAGCtTGTTTCGCTCGCAGCcGGTCTGGAGCGAaacTcATCGGCACaGACAAcTCTGTTG
         a        a     c  c            a          agcta t     g  g     t     c 
                                                    cgcg          t           g 
                                                                                
                                                                                

      1370      1380      1390      1400      1410      1420      1430      1440
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  **  *  * ** ** *  ** ** *********** ** **  **** ******** **  * ** ****  ***** 
TCCTCTCTaGGAAGTACACCTCCTTcCCATGGCTGCTCGGtTGTGCTGCcAACTGGATCCTgCGCGGGACGTCCTTTGTT
 a     cc r  a  t  a     t           a  a        a                            
        m a                             g                                       
        g                               c                                       
                                                                                

      1450      1460      1470      1480      1490      1500      1510      1520
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
***** ** ** * ********* ******** ** **  **** **  * **  * *  ** **     * * **  * 
TACGTCCCGTCGGCGCTGAATCCcGCGGACGAcCCCTCcCGGGGtCGCTTGGGGcTgTAcCGCCCcCTTCTcCGTCTGCc
        a  a           a        t  t      c  tc a  ag c tt     t     g     a t
        c              t                                a              t        
                                                                                
                                                                                

      1530      1540      1550      1560      1570      1580      1590      1600
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
***    ** ** ***** *    ******** ***** * * **   *** *** * *    ****   **********
GTTCCAGCCGACgACGGGTCGCACCTCTCTTTACGCGGaCTCCCCGTCTGTTCCTTCTCATCTGCCGGaCCGTGTGCACT
   y g   a  c        t                c            g       g        t           
            a                         t                                         
                                                                                
                                                                                

      1610      1620      1630      1640      1650      1660      1670      1680
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
** ***************     **** ** *** ***** ***         *    *         *         * 
TCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCCctGgAgttTGCCAACAGTCTTACATAAgaGGACTc
                  a a      a            a   atcaa acc    c tg c    t c  ac     a
                                              a   t        a  y         cm     m
                                              y                                 
                                                                                

      1690      1700      1710      1720      1730      1740      1750      1760
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                    *     *       **  **    * *** * ***   ** ***
TTGGACTTTCAGGA------------cGGTCAATgACCTGGATCGAAGAATACATCAAAGACTGTGTATTTAAgGACTGG
       c  c  g            aa     ccc       t c   c   t   c         g    ca      
          g               t                      t                              
                          g                                                     
                                                                                

      1770      1780      1790      1800      1810      1820      1830      1840
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *****   **  * **      *  ** *   *      *  ******* * *  ****  **** *            
GAGGAGcTGGGGGAGGAGAttAGGTTAAaGgTCTTTGTAtTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACC
      tc         cc       t a t a   cc                            cg          
                   ga                                                           
                                                                                
                                                                                

      1850      1860      1870      1880      1890      1900      1910      1920
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
      * ** * *********** **     *  **  ****  ***  ******** *** ************ * **
ATGCAACTTTTTCACCTCTGCCTAATCATCTTTTGTTCATGTCCtACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCT
   t t                  g    t c          c                                   
                                                                                
                                                                                
                                                                                

      1930      1940      1950      1960      1970      1980      1990      2000
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**  * ********* ****  * ********  ** ** **    **  *  *  * *****  *    ** *  *  *
TTgGGGCATGGACATTGACCCTTATAAAGAATTTGGAGCTTCTGTGGAaTTaCTCTCTTTTTTGCCTTCTGAtTTCTTCC
   a         c                    c      ac   gc     g         atc  c    at 
                                            g                      ca           
                                                                   g            
                                                                   k            

      2010      2020      2030      2040      2050      2060      2070      2080
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*        *  *  *  *  *  ****   * *  *        *     *  * **  *  * *      *       
CgTCaGTTCGGGACCTACTCGACACCGCTTCAGCcCTcTACcGGGATGCTtTAGAgTCACCaGAACATTGCACcCCcaAc
 a  gacaa     ca          cg     tctta r     gc  a      g      t agatc t
 t  tr           t           a       g     a     c                   t   m  
                                     a                                          
                                                                                

      2090      2100      2110      2120      2130      2140      2150      2160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
** *  *   *  * **   *       * **    **  *        * *      *** ***  * *  **  *  *
CATACcGCTCTCAGGCAAGCTATtTTGTGcTGGGGTGAgTTAATGACTTTGGCTTCCTGGGTGGGcAATAAtTTGGAaGA
  c  t  ca        at g agca  t   aag  ag   cagt c c  ca          tc c  c   c  
                       c          c           a   t   k           a         
                                                      g                       
                                                                                

      2170      2180      2190      2200      2210      2220      2230      2240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  ***      ** *        *  * * **            ****  * **    *  *         *******  
cCCTGCaGCtAGGGAttTAGTaGTTAAcTATGTcAAcACTaAcATGGGCcTaAAaATTAGACAAtTgtTGTGGTTTCACA
   gtt c     cc g yg  gg t     t  t t c t      t g  g     g c acg          r
     s            c                   a                         a              g
                                                                                
                                                                                

      2250      2260      2270      2280      2290      2300      2310      2320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  ** *   *    ****  *         ** *  *   * * *  *  *  *  ****** * * *** **       
TTTCCTGcCTTACTTTTGGAAGAGAAACAGTTCTTGAGTATTTGGTGTCcTTTGGAGTGTGGATTCGCACTCCtCCtGCT
     ta attg       cctgt    g ac a           t     g                 agtacta
        m c y          a cr     a                                         aay   
                                                                                
                                                                                

      2330      2340      2350      2360      2370      2380      2390      2400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**    *    ******** **** ****    ***** **         * * ***     *  * ** *   *  *  
TATAGACCACCAAATGCCCCTATCcTATCCACACTTCCGGAAACTACTGTTGTTAGACGACGAGGCAGGTCCCCTaGAAG
  c  g   ga             t    at           gt g     a     ga a      a t     n
                                                                                
                                                                                
                                                                                

      2410      2420      2430      2440      2450      2460      2470      2480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    ****** *** * *   ****** *** ***  * * *   *     **** *******   * **   *****  
AAGAACTCCCTCGCCTCGCaGACGAAGgTCTCAATCGCCGCGTCGCaGAAGATCTCAATCTCCAGCTTCCCAATGTTAGT
nnn                ca      a        a a g     cac              gt      gc      y
                                                                                
                                                                                
                                                                                

      2490      2500      2510      2520      2530      2540      2550      2560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
** **     * *       ***    *  ** ** ** ** **  ******  **    *  *** ** * **    * 
ATTCCTTGGACTCATAAGGTGGGAAAtTTTACGGGgCTcTAcTCtTCTACTGTtCCTgCTTTtAATCCTgACTGGTTaAC
              c    k      c     a  a  t  t         a   a    c   t  a t   gcc  
                   g                                 g   r           c       g  
                                                                                
                                                                                

      2570      2580      2590      2600      2610      2620      2630      2640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 **   ******  * ***** *  **  *  *  * **    *  ***** * **  ** ** **  * ** **  * *
TCCTTCTTTTCCTGAtATTCATTTaCATCAAGAtcTGATatctAAATGTGAACAATTTGTAGGCCCtCTcACaAAAAATG
   g         a c        g  cg ga ct a  tcac          g      g  t   t  t   c   
                                          a                        a  c       
                                                                                
                                                                                

      2650      2660      2670      2680      2690      2700      2710      2720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  *       ** *** *  * *****  * * * * *  ** *     ** ***** ** *     ** ** *  ** 
AATTgAGAAGaTTaAAATTggTtATGCCAgCcAGATTtTtTCCTAAggTTACcAAATAtTTTCCTaTGGAaAAaGGaATt
    ac g rg  g     aa c      t t r   c      acac  t     c  c  cc a  g  g  c  c
                                                    a           at    c     g   
                                                                      t     t   
                                                                                

      2730      2740      2750      2760      2770      2780      2790      2800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
** **  * ****  **  *    *********** **  *  *    ** ****  *****  * *** *    **  *
AAACCcTATTATCCTGAgcAtGcaGTTAATCATTAtTTTAAgACcAGACAtTATTTGCATACTTTATGGAAgGCgGGaAT
  g         a  ta cttg           c  cc  a rg  c            c t     a  a   
                    g              y      t                          r  r   
                                                                                
                                                                                

      2810      2820      2830      2840      2850      2860      2870      2880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  ****    *   *   * *    * **  ** ** ** ** ** *  **  * ****** ** *   ***********
ttTATATAAGAGAGAATCCACACGTAGCGCCTCATTTTGTGGGTCACCATATTCcTGGGAACAAGAGCTACAGCATGGGA
cc       r rgr       c aa s   a     c  k           ca t         a t             
 y                     r                                                        
                                                                                
                                                                                

      2890      2900      2910      2920      2930      2940      2950      2960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*****    ** **                                   **** ** ***** *** * **  * *****
GCACCTCTcTCAACGACacGAAGgGGCATGGGACaGAATCTcTCTGTgCCCAATCCtCTGGGaTTCTTtCCAGACCATCA
        a        ta    a          t      t     a        a     c   c g   r a     
                 g                                      g                       
                                                        c                       
                                                                                

      2970      2980      2990      3000      3010      3020      3030      3040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  *******  * ****   ***** *** **   * ** *****  ******    ****** * ************ *
GCTGGATCCtCTaTTCAGgGCAAATTCCAGCAGTCCCGAcTGGGACTTCAACAaAAACAAGGACAaTTGGCCAATGGCAA
 t        t    aa          a      a  t             ccgc        c              
                                                        m        g              
                                                        g                       
                                                                                

      3050      3060      3070      3080      3090      3100      3110      3120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
******** *    * **     *  ** ** ** *  ** **    ***** *** *  * ** ***** ** *  ** 
ACAAGGTAGGA---GTGGGAGGaTACGGTCCaGGGTTCACACCCCCACACGGTGGCCTGtTGGGGTGGAGcCCtCAGGCA
                    acc  t  c  t     t     a  t         t  c    a     t  a  a   
                      t        c                                                
                                                                                
                                                                                

      3130      3140      3150      3160      3170      3180      3190      3200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
** **     *  * **   * **    * ** ***    *  **********          *   *   *   *    
CAgGGTGTgcTaACAACcTTGCCAGCAGATCCGCCTCCTGCTTCCACCAATCGGCGGTCCGGGAGaAAg--CCAACCCCA
  a   a tt     a       tga    a        cc           aaaa g  a  g  a    g     t
               t                                               r              
                                                                              
                                                                              

      3210      3220      3230      3240       
....:....|....:....|....:....|....:....|....:..
    *** *    * *  ***** ** ** **             * 
GTCTCTCCACCTCTAAGAGACACaCATCCACAGGCcATGCAGTGGAA
a                      t           ag a  aa    
                       c           g           
                                               
                                               
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