HBVdb

Dataset for nucleotide sequence Genomes of genotype F

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        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
          ** **                *     *                   **** *    * ** * *    *
CTCaACcCAGTTCCACCAGGCtCTGTTaGATCCgAGGGTAAGGGCTCTGTATtTtCCTGCTGGTGGCTCCAGTTCAGaGA
t  ct ta    t  t  aa ct    g  c  c aa    a        gcc-c                      ga 
                                 a                --- -                         
                                                                                
                                                                                

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* *    ** ** **  * *****   * *  * *** ****  *    **  ***** * ** **     * **  ** 
CaCAGAACCCTGCTCCGACTATTGCCTCTCTCACATCATCAATCTTCTcGAAGACTGGGGGCCCTGCTAtGAACATGGAc
 g  a       t             y    t          c  c  t  c        c  t   c c         g
                                             a              a      a            
                                                                                
                                                                                

       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* *      **   *  **    **  ** * *   * *   * ** *  *  **  *  * **   *** ** **  **
AACATCACATCAGGACTCCTAGGACCCCTGCTCGTGTTACAGGCGGTGTGTTTCTTGTTGACAAAAATCCTCACAATACC
 g  ctt         a    a                           t  c  c     t  g     g  a   g  
                                                 c                              
                                                                                
                                                                                

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    *  **  *** ** *********** ** ****** * *     * *   ***** ** ******  * * *****
ACAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGActACCCGGGTGTCCTGGCCAAAATTCGCAGTCCC
  g                             g        a  a ac   a                            
                                            r                                   
                                            c                                   
                                                                                

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
****************** *****  *******  * ***** **  ***** * *  ** ** ** ***** ****** 
CAACCTCCAATCACTTACCAACCTCCTGTCCTCCAACTTGTCCTGGCTATCGtTGGATGTGTCTGCGGCGTTTTATCATC
                                              t     c                           
                                                                                
                                                                                
                                                                                

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
******* *********** ******** **************** **** *     ***** ******** ***** * 
TTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCT
                                             g       c  g                       
                                                                                
                                                                                
                                                                                

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
       *           *             ** *** ***   ****   **** **  ** **** * *   ** *
AcTTCCAGGATCcACGACCAC------------CAGCACGGGACCaTGCAAAACCTGCACAACTCTTGCTCAAGGAACCT
 a          tt a                             c     g        g        a     c    
            a                                                                   
                                                                                
                                                                                

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 **** * ***** ** ** *** * * *** * *** ***** ***** *********** ***** **   ** *** 
CTATGTTTCCCTCcTGtTGCTGTTCcAAACCcTCGGACGGAAACTGCACtTGTATTCCCATCCCATCATCtTGGGCTTTA
             t  c  t   a a     t                 c                    c         
             a           m     y                                                
                                                                                
                                                                                

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
***** * ********  ** * ****  ** ** *** * ***** ******* ***  *  ** ***** * **  * 
GGAAAATACCTATGGGAGTGGGCCTCAGCCCGTTTCTCCTGGCTCAGTTTACTAGTGCAATTTGTTCAGTGGTGCGTAGG
                           s          t       a                              c  
                                      a       k                                 
                                                                                
                                                                                

       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* ********* *** **** **     *    **** * ***** **** ** *** **   *   * *  **  *  *
GCTTTCCCCCACTGTcTGGCTTTTAGTTATATGGATGATCTGGTATTGGGGGCCAAATCTGTGCAGCATCTTGAGTCCCT
           t   t              g                               t  a              
                                                                                
                                                                                
                                                                                

       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 **  *   * ** * *****  *  ****  ****  ** *  * **  *  * ** ** **  * ***** **     
TTATACCGCTGTTACCAATTTTCTGTTATCTGTGGGTATCCATTTaAATACcTCtAAAACaAAAAGATGGGGTTAcaccc
                      t        t             g   g tg g     g  gc       c  ttatt
                                                            t                 a 
                                                                                
                                                                                

       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  * ** *****  *    ** *   ***  **  * ** ** **  * ** ***   *  **  * *     *  ** 
TAcATTTcATGGGTTATGTtATTGGcAGTTGGGGAtCaTTACCcCAAGATCAcATTGTACAcAAAaTCAAAGAtTGTTTT
 ca    t     a     c     t         g g  g  a        t   a t  a  gc   rg  a  c   
             c     a     a         a       t                                    
                                                                                
                                                                                

       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   *** * ***      ** **  * ** ***** ** ** **  *  * ** **  *  ***  ** ** ** *  * 
cGtAAACTTCCTGTAAATCGtCCaATTGAtTGGAAAGTTTGTCAaCGcATTGTGGGtCTTTTGGGCTTTGCcGCcCCtTT
a a     g           c  t  a  c        c  c  g  t  a     a   c          t  t  c  
  g                 a  c              a                                g        
                                                                       a        
                                                                                

      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  * ***** ** ** ** ***********     *    ** ** *  ** **  * ** ***** ** ****  ** *
tACcCAATGTGGTTATCCTGCTCTCATGCCTcTGTATgCCTGTATaACTGCtAAACAGGCTTTTGTCTTTTCGCCAACTT
c  t     c                     t a  caat     t  c  g        g     t  c        c 
   a                                         c              c                 a 
                                                                                
                                                                                

      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  **  ***** *       ** ***    ********** ***    ******** * *** * ***************
ACAAGGCCTTTCTcTGTaAACAaTACATGAACCTTTACCCCGTTGCTCGGCAACGGCCAGGCCTGTGCCAAGTGTTTGCT
     a       a   c    g   gc c                ca          g                     
             g                                                                  
                                                                                
                                                                                

      1210      1220      1230      1240      1250      1260      1270      1280
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
** ** ** **** *** ****** * *   * *  ** ******  *** *   *****  ******  * ******* 
GACGCAACCCCCACTGGTTGGGGCTTGGCCATTGGCCATCAGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCA
  t     t        c                                                     a        
                                                                                
                                                                                
                                                                                

      1290      1300      1310      1320      1330      1340      1350      1360
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* * ** **  **   *  ** ** ** *** ** *  *** ***  *     * *  ** ** *     ** *  *  *
TACTGCGGAACTCCTTGCAGCtTGTTTCGCTCGCAGCCGGTCTGGAGCGAaacTcATCGGcACaGACAACTCTGTTGTCC
               a     c  c            a            cta t     g  g     t     c  a 
                                                  gcg                           
                                                                                
                                                                                

      1370      1380      1390      1400      1410      1420      1430      1440
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  *  * ** ** *  ** ** *********** ** **  ***  ** ***** **  * ** ****  ***** ***
TCTCTaGGAAGTACACCTCCTTcCCATGGCTGCTCGGtTGTGCTGCcAACTGGATCCTgCGCGGGACGTCCTTTGTTTAC
    cc                t              a        a           a                     
     m                               g                                          
                                     c                                          
                                                                                

      1450      1460      1470      1480      1490      1500      1510      1520
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
** ** ** * ********* ** ***** ** **  **** **  * **  * *  ** **     * * **  * ***
GTCCCGTCGGCGCTGAATCCcGCGGACGAcCCCTCcCGGGGtCGCTTGGGGcTgTAcCGCCCcCTTCTcCGTCTGCcGTT
     a  a           a        t  t  t     c  tc a  ag c tt     t     g     a t   
                    t                                a              t           
                                                                                
                                                                                

      1530      1540      1550      1560      1570      1580      1590      1600
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    ** ** ***** *    ****** * ***** * * **   *** *** * *    ****   ************ 
CCAGCCGACgACGGGTCGCACCTCTCTTTACGCGGaCTCCCCGTCTGTTCCTTCTCATCTGCCGGaCCGTGTGCACTTCG
  g   a  c                         c            g       g        t              
         a                         t                                            
                                                                                
                                                                                

      1610      1620      1630      1640      1650      1660      1670      1680
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
***************     **** ** *** ***** ***         *    *         *         *    
CTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCCctGgAgttTGCCAACAGTCTTACATAAgaGGACTcTTG
               a a      a                 tc a acc    c t  c    t c  ac     a   
                                           a               y         c      m   
                                                                                
                                                                                

      1690      1700      1710      1720      1730      1740      1750      1760
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                       *       **  **    * *** * ***   ** *** **
GACTTTCAGGAcGGTCA------------ATgACCTGGATCGAAGAATACATCAAAGACTGTGTATTTAAgGACTGGGAG
    c  c   a     a ga        --cc       t     c                 g    ca         
       g   t                   --                                               
           g                                                                    
                                                                                

      1770      1780      1790      1800      1810      1820      1830      1840
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
***   **  * **      *  ** *   *      *  ******* * *  ***   **** *               
GAGcTGGGGGAGGAGAttAGGTTAAaGgTCTTTGTAtTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATG
   t            cc       t a t a    c                            cg             
                                                                                
                                                                                
                                                                                

      1850      1860      1870      1880      1890      1900      1910      1920
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   * ** * **** ****** **     * ***  ****  ***  ******** *** ************ * **** 
CAACTTTTTCACCTCTGCCTAATCATCTTTTGTTCATGTCCtACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTg
                            c            c                                     a
                                                                                
                                                                                
                                                                                

      1930      1940      1950      1960      1970      1980      1990      2000
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 * ********* ****  * ********  ** ** **    **  *  *  * *****  *    ** *  *  **  
GGGCATGGACATTGACCCTTATAAAGAATTTGGAGCTTCTGTGGAATTaCTCTCTTTTTTGCCTTCTGAtTTCTTCCCgT
  a         c                    c      ac   gc g     g         atc  c    at  a 
                                         g                      ca            t 
                                                                g               
                                                                k               

      2010      2020      2030      2040      2050      2060      2070      2080
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
      *  *  *  *  *  ****   * *  *        *     *  * **  *  * *      *       ** 
CaGTTCGGGACCTACTCGACACCGCTTCAGCcCTcTACcGGGATGCTtTAGAgTCACCaGAACATTGCACcCCcaAcCAT
 gaca     t   a          c     t  tctta       gc ga a     g  g      t a atc t  c
 t                                g                       t           t   m     
                                                                                
                                                                                

      2090      2100      2110      2120      2130      2140      2150      2160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  *   *  * **   *       * **    **  *        * *      *** ***  * *  **  *  *  *
ACcGCTCTCAGGCAAGCTATtTTGTGcTGGGGTGAgTTAATGACTTTGGCTTCCTGGGTGGGcAATAAtTTGGAaGAcCC
  t  ca         t g ag a  t   aa   ag   cagt   c  ca          tc    c   c g  t  
                    c                      a   t              g           c     
                                                                          t     
                                                                                

      2170      2180      2190      2200      2210      2220      2230      2240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**      *  *        *  * * **            ****  * **    *  *         *******    *
TGCaGCtAGGGAttTAGTaGTTAAcTATGTcAAcACTaAcATGGGCcTaAAaATTAGACAAtTgtTGTGGTTTCACATTT
  gtt c     cc c  g     t     t  t t c t      t g  g  c a    c ac           rc  
               g                   a                                            
                                                                                
                                                                                

      2250      2260      2270      2280      2290      2300      2310      2320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* *   *    ** *  *         **    *   * * *  *  *  *  ****** * * *** **       ** 
CCTGcCTTACTTTTGGAAGAGAAACAGTTCTTGAGTATTTGGTGTCcTTTGGAGTGTGGATTCGCACTCCtCCtGCTTAT
    ta attg         c tgt    g ac             t     g                 agtacta  c
                      c      a                                          a       
                                                                                
                                                                                

      2330      2340      2350      2360      2370      2380      2390      2400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   *    ******** **** ****    ***** **         * * * *     *  * **              
AGACCACCAAATGCCCCTATCcTATCCACACTTCCGGAAACTACTGTTGTTAGACGACGAGGCAGGTCCCCTaGAAGAAG
  g   ga             t                 gt g     a     gc a  c     annnnncnnnnnnn
                                                       a            t   n       
                                                                                
                                                                                

      2410      2420      2430      2440      2450      2460      2470      2480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
            * *   ****** *** ***  * * *   *     **** *******   * **   *****  ** 
AACTCCCTCGCCTCGCaGACGAAGgTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCCAGCTTCCCAATGTTAGTATT
nnnnnnnnnnnn    ca      a        a   g     cac               t      gc          
                                                                                
                                                                                
                                                                                

      2490      2500      2510      2520      2530      2540      2550      2560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**     * *       ***    *  *  ** ** ** **  ******  **    *  *** *  * **    *  **
CCTTGGACTCATAAGGTGGGAAAtTTTACGGGgCTcTAcTCtTCTACTGTtCCTgCTTTtAATCCTgACTGGTTAACTCC
           c    k      c     a  a  t  t  c        a   a    c   t  a t   gcc     
                g                                 g   r           c       g     
                                                                                
                                                                                

      2570      2580      2590      2600      2610      2620      2630      2640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   ******  * ***** *  **  *  *    **    *  ** ** *  *  ** ** **  * ** *   * **  
TTCTTTTCCTGAtATTCATTTaCATCAAGAtcTGATAtctAAATGTGAACAATTTGTAGGCCCtCTcACaAAAAATGAAT
          a c        g  cg ga ct a  tcac          g      g  t  a  t  c          
                                       a                       g  a  t          
                                                                                
                                                                                

      2650      2660      2670      2680      2690      2700      2710      2720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
        ** *** *  * *****  * * * * *  ** *     ** ***** ** *      * ** *  ** ** 
TgAGAAGaTTaAAATTggTtATGCCAgCcAGATTtTtTCCTAAggTTACcAAATAtTTTCCTaTGGAaAAaGGaATtAAA
 ac g  g  g     aa c      t t     c a      ac c  t     c     cc a  g  g  c  c  g
                                                              t    c     g      
                                                                   t     t      
                                                                                

      2730      2740      2750      2760      2770      2780      2790      2800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**  * ****   *  *    *********** **  *  *    ** ***   * ***  * *** *    **     *
CCcTATTATCCTGAgcAtGcaGTTAATCATTAtTTTAAgACcAGACAtTATTTGCATACTTTATGGAAgGCgGGaATttT
  t        a  ta cttg           c  c  a  a     c            c t     a  a  c  cc 
                                y     r                             r  r      y 
                                                                                
                                                                                

      2810      2820      2830      2840      2850      2860      2870      2880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
***    *   *   * *    * **   * ** ** ** ** *  **  * ****** ** *   **************
ATATAAGAGAGAATCCACACGTAGCGCCTCATTTTGTGGGTCACCATATTCcTGGGAACAAGAGCTACAGCATGGGAGCA
      r r r       c a      a                       t         a                  
                                                                                
                                                                                
                                                                                

      2890      2900      2910      2920      2930      2940      2950      2960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**    **  *                                   **** ** ***** *** * **  * *****  *
CCTCTcTCAACGACacGAAGgGGCATGGGACaGAATCTcTCTGTgCCCAATCCtCTGGGaTTCTTtCCAGACCATCAGCT
     a        ta    a          t      t     a        a     c   c g   r a        
              g                                      g                          
                                                                                
                                                                                

      2970      2980      2990      3000      3010      3020      3030      3040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
******  * ****   ***** *** **   * ** *****  ******    ****** * ********** * ****
GGATCCtCTaTTCAGgGCAAATTCCAGCAGTCCCGAcTGGGACTTCAACAaAAACAAGGACAaTTGGCCAATGGCAAACA
      g  t    aa          a         t             c gc        c                 
                                                              g                 
                                                                                
                                                                                

      3050      3060      3070      3080      3090      3100      3110      3120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* *** *      **     *   * **  * *  ** **    ***** *** *  * ** * *** ** *  ** ** 
AGGTAGGAG---TGGGAGGaTACGGTCCaGGGTTCACACCCCCACACGGTGGCCTGtTGGGGTGGAGcCCtCAGGCACAg
                g ct     c  t     t        t         t  c    a     t  a  a     a
                   c        c                                                   
                                                                                
                                                                                

      3130      3140      3150      3160      3170      3180      3190      3200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**     *  * **   * **    * ** ***    *  *********           *   * *            *
GGTGTgcTaACAACcTTGCCAGCAGATCCGCCTCCTGCTTCCACCAATCGGCGGTCCGGGAGaAAgCCAACCCCAGTCTC
   a tt t     a       tga    a        cc           a aa g  a  g  a              
        c                                                                       
        g                                                                       
        r                                                                       

      3210      3220      3230      3240  
....:....|....:....|....:....|....:....|..
** *    * *  ** ** ** ** **             * 
TCCACCTCTAAGAGACACaCATCCACAGGCcATGCAGTGGAA
                  t           ag a  a     
                  c                       
                                          
                                          
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