HBVdb

Dataset for nucleotide sequence Genomes of genotype F

[Download (right click)] [Download Frequencies (right click)] [Sequences] [Alignment]

        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  *       ** **         *      *     **       **         ******  * **** * *    *
CTCaACcCAGTTCCACCAGGCtCTGTTaGATCCgAGGGTAAGGGCTCTGTATtTTCCTGCTGGTGGCTCCAGTTCAGaGA
t  ct ta    t  t  aa ct    g     c aa    a        gcc c                     aga 
                                 a                                              
                                                                                
                                                                                

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* **   ** ** ** ** ***** * * *  * *** ****  *    **  ***** * ** **     * ****** 
CaCAGAACCCTGCTCCGACTATTGCCTCTCTCACATCATCAATCTTCTcGAAGACTGGGGGCCCTGCtAtGAACATGGAc
 g  a       t             y    t          c  c  t  c        c  t   c c         g
                                             a  y                  a y          
                                                                                
                                                                                

       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* *      ***  *  **   ***  ** * **  * **  * ** *  *  ** **  * **   *** ** **  **
AACATCACATCAGGACTCCTAGGACCCCTGCTCGTGTTACAGGCGGTGTGTTTCTTGTTGACAAAAATCCTCACAATACC
 g  ctt         a    a                        g  t  c  c     t  g     g  a   g  
                                                 c                              
                                                                                
                                                                                

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    *  **  *** ** *********** ** ****** * *     * *   ***** ** ******  * * *****
ACAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGActACCCGGGTGTCCTGGCCAAAATTCGCAGTCCC
 ag  a        t              g  g        a  a ac   a r                          
                                            r                                   
                                            c                                   
                                                                                

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
****************** ** **  *******  ******* **  ***** * *  ***** ** ***** ****** 
CAACCTCCAATCACTTACCAACCTCCTGTCCTCCAACTTGTCCTGGCTATCGtTGGATGTGTCTGCGGCGTTTTATCATC
                  t      t                    t     c                           
                                                                                
                                                                                
                                                                                

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
******* *********** ******** **************** ******  *  ***** ******** ***** * 
TTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCT
                                             g       c  g                       
                                                                                
                                                                                
                                                                                

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  ******** *    ****             ** *** ***   ****   *******  ******* * *   ** *
AcTTCCAGGATCcACGACCAC------------CAGCACGGGACCaTGCAAAACCTGCACAACTCTTGCtCAAGGAACCT
 a          ttta                           g c     g        g        a     c    
            a                                                                   
                                                                                
                                                                                

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 **** ******* ** ** *** * * *** ***** ***** ***** ***************** **   ** *** 
CTATGTTTCCCTCcTGtTGCTGTTCcAAACCcTCGGACGGAAACTGCACtTGTATTCCCATCCCATCATCtTGGGCTTTA
             t  c  t   a a     t                 c                    c         
             a                 y                                                
                                                                                
                                                                                

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
***** * ********  ** * ****  ********* ******* ******* ***  ***** ***** * **  * 
GGAAAATACCTATGGGAGTGGGCCTCAGCCCGTTTCTCCTGGCTCAGTTTACTAGTGCAATTTGTTCAGTGGTGCGTAGG
                           s          t       a                              c  
                                      a       k                                 
                                                                                
                                                                                

       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* ********* *** **** **     *  * ************ **** ** *** ***  **  * *  **  *  *
GCTTTCCCCCACTGTcTGGCTTTTAGTTATATGGATGATCTGGTATTGGGGGCCAAATCTGTGCAGCATCTTGAGTCCCT
           t   t    y    s    g                          a    t  a     g        
           y                                                  a                 
                                                                                
                                                                                

       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 **  *   **** * ****** *  ****  ****  ** *  * **  *  * ***** **  * ***** **     
TTATACCGCTGTTACCAATTTTCTGTTATCTGTGGGTATCCATTTaAATACcTCtAAAACaAAAAGATGGGGTTAcaccc
                      t        t    g        g   g tg g     g  gc       c  ttatt
                                                            t                 a 
                                                                                
                                                                                

       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  * ** *****  *    ** *  ****  **  * ** ** **  * ** ***   *  **  * *  *  *  ** 
TAcATTTcATGGGTTATGTtATTGGcAGTTGGGGAtCaTTACCcCAAGATCAcATTGTACAcAAAaTCAAAGAtTGTTTT
 ca    t     c     c     t         g g  g  a     c  t   a t  a  gc   rg  a  c   
             a     a     a         a       t                 t           g      
             g                     y                                     c      
                                   r                                            

       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   **  * ***      ** **  * ** ***** ** ** **  *  * ** **  *  *** *** ** ** *  * 
cGtAAACTTCCTGTAAATCGtCCaATTGAtTGGAAAGTTTGTCAaCGcATTGTGGGtCTTTTGGGCTTTGCcGCcCCtTT
a a  g  g           c  t  a  c        c  c  g  t  a     a   c          t  t  c  
  g                 a  c              a                                g        
                                                                       a        
                                                                                

      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  * ***** ** ** ** ***********     *    ** ** ** ** **  * ** ***** ** ****  ** *
tACcCAATGTGGTTATCCTGCTCTCATGCCTcTGTATgCCTGTATaACTGCtAAACAGGCTTTTGTCTTTTCGCCAACTT
c  t     c                     t a  caat     t  c  g        g     t  c        c 
   a                                 t m     c              c                 a 
                                                                                
                                                                                

      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  **  ***** *     * ** ***    *** ****** ***    ******** * *** * ******** ******
ACAAGGCCTTTCTcTGTaAACAaTACATGAACCTTTACCCCGTTGCTCGGCAACGGCCAGGCCTGTGCCAAGTGTTTGCT
     a       a   c    g   gctc                ca        t g                     
             g                                            t                     
             t                                                                  
                                                                                

      1210      1220      1230      1240      1250      1260      1270      1280
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
** ** ** **** *** *********** ** *  ** ******  *** *** *****  ******  * ********
GACGCAACCCCCACTGGTTGGGGCTTGGCCATTGGCCATCAGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCA
  t     t                                    c                         a        
                                                                                
                                                                                
                                                                                

      1290      1300      1310      1320      1330      1340      1350      1360
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*** ** ** ***** ** ** ** ********* ** *******  *     * *  ** ** ** ** ** *  ** *
TACTGCGGAACTCCTTGCAGCtTGTTTCGCTCGCAGCCGGTCTGGAGCGAaacTcATCGGcACaGACAAcTCTGTTGTCC
      a        a     c  c            a           gcta t     g  g     t     c  a 
                                                  gcg          c           g    
                                                                                
                                                                                

      1370      1380      1390      1400      1410      1420      1430      1440
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* **  * ** ** ** ** ** *********** ** **  ***  ** ***** **  * ** ****  ***** ***
TCTCTaGGAAGTACACCTCCTTcCCATGGCTGCTCGGtTGTGCTGCcAACTGGATCCTgCGCGGGACGTCCTTTGTTTAC
    cc r              t              a        a           a                     
     m a                             g                                          
     g                                                                          
                                                                                

      1450      1460      1470      1480      1490      1500      1510      1520
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
** ** ** * ****** ** ** ***** ** **  **** **  * **  * *  ** **     * * **  * ***
GTCCCGTCGGCGCTGAATCCcGCGGACGAcCCCTCcCGGGGtCGCTTGGGGcTgTAcCGCCCcCTTCTcCGTCTGCcGTT
     a  a        c  a        t  t  t     c  tc a  ag c tt     t     g     a t   
     c  t           t                                a g            t           
                                                                                
                                                                                

      1530      1540      1550      1560      1570      1580      1590      1600
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    ** ** *  ** *  * ****** ******* * ***** **** *** * *  * ***** ************* 
CCAGCCGACgACGGGTCGCACCTCTCTTTACGCGGaCTCCCCGTCTGTTCCTTCTCATCTGCCGGaCCGTGTGCACTTCG
y g   a  c        t                c            g       gc       t              
         a                         t            k                               
                                                                                
                                                                                

      1610      1620      1630      1640      1650      1660      1670      1680
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*************** *   **** ****** ***** ***         *    *         *         *    
CTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCCctGgAgttTGCCAACAGTCTTACATAAgaGGACTcTTG
               a a      a            a    tc a acc      t  c    t c  ac     a   
                                           a               y         cm     m   
                                           y                         r          
                                                                                

      1690      1700      1710      1720      1730      1740      1750      1760
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                       *    *  **  **    * *** * ***   ** *** **
GACTTTCAGGAcGGTCA------------ATgACCTGGATCGAAGAATACATCAAAGACTGTGTATTTAAgGACTGGGAG
    cc c  ta    -atgac    t a--cc       t c   c                 g    ca         
       g  gt                   --                                               
           g                                                                    
                                                                                

      1770      1780      1790      1800      1810      1820      1830      1840
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
***   **  * **      *  ** *   *      *  ******* * ** ***   **** *               
GAGcTGGGGGAGGAGAttAGGTTAAaGgTCTTTGTAtTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATG
   t    t       cc       t a t a    c                            cg          cc 
                                                                                
                                                                                
                                                                                

      1850      1860      1870      1880      1890      1900      1910      1920
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   * ** * **** ****** **     * ***  ****  *** ************* ************ * **** 
CAACTTTTTCACCTCTGCCTAATCATCTTTTGTTCATGTCCtACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTg
  t                  g    t c n          c                                     a
                                                                                
                                                                                
                                                                                

      1930      1940      1950      1960      1970      1980      1990      2000
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 * ********* ***** * *** ****  ** ** **    **  *  *  * *****  *    ** *  *  **  
GGGCATGGACATTGACCCTTATAAAGAATTTGGAGCTTCTGTGGAaTTaCTCTCTTTTTTGCCTTCTGAtTTCTTCCCgT
  a         c                    c      ac   gc g     g         atc  c    at  a 
                                         g                      ca            t 
                                                                k               
                                                                g               

      2010      2020      2030      2040      2050      2060      2070      2080
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
      * **  *  *  *******   * *  *     *  *     *  * **  *  * ** *   *       ** 
CaGTTCGGGACCTACTCGACACCGCTTCAGCcCTcTACcGGGATGCTtTAGAgTCACCaGAACATTGCACcCCcaAcCAT
 gaca     t  ta          ca    t  tctta r  g  gc ga a     g  g      t agatc t  c
 t            t           g       g     a     c           t         w t   m     
                                                                                
                                                                                

      2090      2100      2110      2120      2130      2140      2150      2160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  *   *  * **           * ***   **  *        * *     **** ***  * *   *  *  *   
ACcGCTCTCAGGCAAGCTATtTTGTGcTGGGGTGAgTTAATGACTTTGGCTTCCTGGGTGGGcAATAAtTTGGAaGAcCC
  t  ca        at g ag a  t   aag  ag   c gt   c  ca t        tc c  c   c g  t  
                    c                      a   t   k          g  a        t     
                                                                          c     
                                                                                

      2170      2180      2190      2200      2210      2220      2230      2240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**      *  *       **  * * **            ***** * **    *  *      *  *******    *
TGCaGCtAGGGAttTAGTaGTTAAcTATGTcAAcACTaAcATGGGCcTaAAaATTAGACAAtTgtTGTGGTTTCACATTT
  gtt c     cc c yg   g t     t  t t c t      t g  g  c a    c ac          tgc  
             y g                   a                                        r   
                                                                                
                                                                                

      2250      2260      2270      2280      2290      2300      2310      2320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* *   *    ** *  *       * **    * * * * *  *  *  ** ****** * ***** **       ** 
CCTGcCTTACTTTTGGAAGAGAAACAGTTCTTGAGTATTTGGTGTCcTTTGGAGTGTGGATTCGCACTCCtCCtGCTTAT
    ta cttg         c tgt    g ac a           t     g                 aatacta  c
     m a y            cr     a                                         gay      
                                                                                
                                                                                

      2330      2340      2350      2360      2370      2380      2390      2400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 * *     ******* **** ****    ***** **     ** ** *****     * ** **              
AGACCACCAAATGCCCCTATCcTATCCACACTTCCGGAAACTACTGTTGTTAGACGACGAGGCAGGTCCCCTaGAAGAAG
  g    a             t    at           gt g     a     gc a  c     annnnncnnnnnnn
                                                       a            t   n       
                                                                                
                                                                                

      2410      2420      2430      2440      2450      2460      2470      2480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
            * **  ******  ** ***  * * **  *     **** *******     **   *****  ** 
AACTCCCTCGCCTCGCaGACGAAGgTCTCAATCGCCGCGTCGCaGAAGATCTCAATCTCCAGCTTCCCAATGTTAGTATT
nnnnnnnnnnnn    ca      a        a a g     cac              gtg     gc      y   
                                                                                
                                                                                
                                                                                

      2490      2500      2510      2520      2530      2540      2550      2560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**     * *       ***    *  *  ** ** ** **  ******  **    *  *** *  * **    *  **
CCTTGGACTCATAAGGTGGGAAAtTTTACGGGgCTcTAcTCtTCTACTGTtCCTgCTTTtAATCCTgACTGGTTaACTCC
                k      c     a  a  t  t  c        a   a    c      a t   gcc     
                g                                 g   r           c       g     
                                                                                
                                                                                

      2570      2580      2590      2600      2610      2620      2630      2640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   ******  * ***** *  **  *  *  * **    *  ** ** *  ** ** ** **  * ** *   * *** 
TTCTTTTCCTGAtATTCATTTaCATCAAGAtcTGATatctAAATGTGAACAATTTGTAGGCCCtCTcACaAAAAATGAAT
          a c        g  cg ga ct a  tcac          g      t  t  a  t  t          
                                       a                 g     g  a  c          
                                                                                
                                                                                

      2650      2660      2670      2680      2690      2700      2710      2720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*       ** *** *  * *****  * * *** *  ** *     ** ***** ** *      * ** *  ** ** 
TgAGAAGaTTaAAATTggTtATGCCAgCcAGATTtTtTCCTAAggTTACcAAATAtTTTCCTaTGGAaAAaGGaATtAAA
 ac g rg  g     aa c      t t r   c a      acac  t     c  c  cc a  g  g  c  c  g
                                                              t    c     g      
                                                                   t            
                                                                                

      2730      2740      2750      2760      2770      2780      2790      2800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**  * ****  **  *    *********** **  *  *    ** ***   * ***  * *** *  * **  *  *
CCcTATTATCCTGAgcAtGcaGTTAATCATTAtTTTAAgACcAGACAtTATTTGCATACTTTATGGAAgGCgGGaATttT
  t        a  ta cttg           c  c  a  a rg  c            c t     a  a  c  cc 
                 ga             y     r  t                          r  r  r   y 
                                                                                
                                                                                

      2810      2820      2830      2840      2850      2860      2870      2880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
****   *   *   * *    * **   **** ** ** ****  **  * ********* *   ***** ********
ATATAAGAGAGAATCCACACGTAGCGCCTCATTTTGTGGGTCACCATATTCcTGGGAACAAGAGCTACAGCATGGGAGCA
      r rgr g     c aa s   a     c  k            a t         a t                
                    r                                                           
                                                                                
                                                                                

      2890      2900      2910      2920      2930      2940      2950      2960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
** *  **  *                                   **** *  *****  *  *  *  * *****  *
CCTCTcTCAACGACacGAAGgGGCATGGGACaGAATCTcTCTGTgCCCAATCCtCTGGGaTTCTTtCCAGACCATCAGCT
     a        ta    a          tc     t     a        a     c   c g   r a     a  
              g                                      g                          
                                                                                
                                                                                

      2970      2980      2990      3000      3010      3020      3030      3040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
******  * ****   ***** *** **   * ** *****  ******    ******** ************ ****
GGATCCtCTaTTCAGaGCAAATTCCAGCAGTCCCGAcTGGGACTTCAACAaAAACAAGGACAaTTGGCCAATGGCAAACA
      g  t    ag          a      a  t             c gc        c                 
                                                     m        g                 
                                                     g                          
                                                                                

      3050      3060      3070      3080      3090      3100      3110      3120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
***** *      **     *  ** ** ** ** ** **    ***** *** *  * ** ***** ** *  ** ** 
AGGTAGGAG---TGGGAGGaTACGGTCCaGGGTTCACACCCCCACACGGTGGCCTGtTGGGGTGGAGcCCtCAGGCACAg
                  cc  t  c  t     t        t         t  c a  a     t  a  a     a
                   t        c                                                   
                                                                                
                                                                                

      3130      3140      3150      3160      3170      3180      3190      3200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**     *  * **   * **    * ** ***    *  **********       *  *   * ** **     * **
GGTGTgcTaACAACcTTGCCAGCAGATCCGCCTCCTGCTTCCACCAATCGGCGGTCCGGGAGaAAgCCAACCCCAGTCTC
  ga tt t     a        ga    a        cc           a aa g     g  a        t     
        c     t                                         t     r                 
        g                                                                       
                                                                                

      3210      3220      3230      3240  
....:....|....:....|....:....|....:....|..
** ***  ***  ** ** ** ** ** *           * 
TCCACCTCTAAGAGACACaCATCCACAGGCcATGCAGTGGAA
            g     t           ag a  a     
                  c           g           
                                          
                                          
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