HBVdb

Dataset for nucleotide sequence PreS2 of genotype D

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        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                    *  **       
ATGCAGTGGAAcTCCACAACCTTCCACCAAACTCTGCAAGATCCCAGaGTGAGAGGCCTGTATTTCCCTGCTGGTGGCTC
g a       ct aa a   t  t  t   g gt a          ag    ag     a   c t              
                    a     a                          t                          
                                                                                

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                   * ** *   *     *                          * *     *   * **   
CAGTTCAGGAACAGTAAACCCTGTTCCGACTACTGcCTCTCcCaTATCGTCAATCTTCTCGAGGATTGGGGACCcTGCGC
a c   c a g   cg          t   c    t     a tc  t              a           t  tat
                                                                               a
                                                                                

       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     ***           *          *        *            **  *    *     *   * *     *
TGAACATGGAGAACATCACATCAGGATTCCTAGGACCCCTgCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATC
c         a               c             t                      c           a    
a                                                                               
                                                                                

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *                 *   **  * *  **   * *       *     **      *         **    *  
CTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGaACtACCGTGTGTCTTGGCCAAAA
           aa                              g            g ac          g         
                                                        c  g                    
                                                                                

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *  *  *               * **   * * *   *  ***           *  * **              * * 
TTCGCAGTCCCCAACCTCCAATCACTCACCAACCTCCTGTCCTCCAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGC
                                    t        g     a     a     t       a        
                                                                                
                                                                                

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
       **     *  * *  *  *      *  *  *     *  ***  *    * *     *   *         *
GTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCC
          a                 t                                   c gg            
                                                                   c            
                                                                                

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**    **                       * *           *       *      *         * *  *    
GTtTGTCCTCTAATTCCA------GGATCtTCAACc---------ACCAGCacGGGACCATGCaGAACCTGCAcGACTcC
  c     aa gc                c  g  t               gt    t c   cag  t     t at
  g                          a     a                                            
                             g                                                  

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
             *                 **  *    **             *    ***   ***** * **** *
TGcTCAAGGAACCTCTATGTATCCCTCCTGTTGCTGTACCAAACCTTCGGACGGAAATTGCACCTGTATTCCCATCCCAT
  t  g   cg        at      a  c     ta     c t   ta    c     a                
                           t                                                    
                                                                                

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* ** **    *  * **  *  * * **   ***  *     **        *     *      *    *  *  *  
CATCcTGGGCTTTCGGAAAATTCCTATGGGAGTGGGCCTCAGCCCGTTTCTCcTGGCTCAGTTTACTAGTGCCATTTGTT
    t                         c        t            a       a                   
    a                                               t                           
                                                                                

       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*     * *           *         **    *     *    ** *          ***  * *           
CAGTGGTTCGTAGGGCTTTCCCCCACTGTTTGGCTTTCAGTTATATGGATGATGTGGTATTGGGGGCCAAGTCTGTACAG
          c              t           t      g t                       aa   cttca
                                              c                             g  c
                                                                                

       810       820       830       840       850       860 
....:....|....:....|....:....|....:....|....:....|....:....|.
   *         *           *       *   *                *   * *
CATCTTGAGTCCCTTTTTACCGCTGTTACCAATTTTCTTTTGTCTTTGGGTATACATTTAA
  c      g      a   t                    c   c    cg     c g 
                                                             
                                                             
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