HBVdb::Dataset - Hepatitis B Virus Database

Dataset for nucleotide sequence PreS2 of genotype D

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        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                        *
ATGCAGTGGAAcTCCACAACCTTCCACCAAACTCTGCAAGATCCCAGaGTGAGAGGCCTGTATTTCCCTGCTGGTGGCTC
  a       ct  a ag  t  t  t   g gt a          ag    ag         c t
                    a


        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                     **     *                                            *
CAGTTCAGGAACAGTAAACCCTGTTCCGACTACTGcCTCTCcCaTATCGTCAATCTTCTCGAGGATTGGGGACCCTGCGC
a c   c agg    g          t   c    ta    a tc  t              a        t  t  tat
                                                                               a


       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
      **                                            *   *                *
TGAACATGGAGAACATCACATCAGGATTCCTAGGACCCCTgCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATC
c         a g             c             t c                    c           a
a


       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                   *   *    *                        **        *             *
CTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGaACtACCGTGTGTCTTGGCCAAAA
           aa                              g           ag ac          g
                                                           a
                                                           g

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                         **              *             *     *              *
TTCGCAGTCCCCAACCTCCAATCACTCACCAACCTCCTGTCCTCCAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGC
                                    t        g           a     t       a



       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                         *     ** *   *     *                        *
GTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCC
a  c      a                            c               a        c gg
                                                                   c


       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
      **                                                                   *
GTtTGTCCTCTAATTCCAG------GATCtTCAACcACCA---------GCacGGGACCATGCaGAACCTGCAcGACTcC
  c      a gc                c  g  t               gt    a c   cag  a    t   aat
  g                          g     a                     t
                             a

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                        *              *    **    **    * *  *
TGcTCAAGGAACCTCTATGTATCCCTCCTGTTGCTGTACCAAACCTTCGGACGGAAATTGCACCTGTATTCCCATCCCAT
  t      c          t      a  c  t    ta     c t   ta    c     a
                           t


       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     **         *   *  * *                 *               *
CATCcTGGGCTTTCGGAAAATTCCTATGGGAGTGGGCCTCAGCCCGTTTCTCCTGGCTCAGTTTACTAGTGCCATTTGTT
    t          c  g                    t            a                    c
    a                                               t


       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*                              *          *    *  *          ***
CAGTGGTTCGTAGGGCTTTCCCCCACTGTTTGGCTTTCAGTTATATGGATGATGTGGTATTGGGGGCCAAGTCTGTACAg
          c              t   c       t      g t           g           aa   cgtca
                                                                            t  c


       810       820       830       840       850       860
....:....|....:....|....:....|....:....|....:....|....:....|.
                         *       *
CATCTTGAGTCCCTTTTTACCGCTGTTACCAATTTTCTTTTGTCTTTGGGTATACATTTAA
  c     ag    a a   t     a            c     c    cg     c g