HBVdb

Dataset for nucleotide sequence Genomes of genotype D

[Download (right click)] [Download Frequencies (right click)] [Sequences] [Alignment]

        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                             *                              ***  * *  *         
cTCCACAACCTTCCACCAAACTCTGCAAGATCCCAGaGTGAGAGGCCTGTATTTCCCTGCTGGTGGCTCCAGTTCAGGAA
t aa ag at  t  t   g gt a          ag    ag      a  c t              a c   c agg
         a                                t                                     
                                                                                

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
        * ** *   *                         *      * **    *   * **        ***   
CAGTAAACCCTGTTCCGACTACTGcCTCTCcCaTATCGTCAATCTTCTCGAGGATTGGGGACCcTGCGCTGAACATGGAG
   cg          t   c    ta  g a tc  t              a  c        t  tatc         a
                                                                     a          
                                                                                

       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
        *        *        * *          * ** **    *   * *   * *     * *    *    
AACATCACATCAGGATTCCTAGGACCCCTgCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACC
 g             c             t                      c           a               
                                                                                
                                                                                

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
        *   **   **  ****    * * *      * **        *        *    *     **      
GCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGaACtACCGTGTGTCTTGGCCAAAATTCGCAGTCCC
aa                              g           ag ac          g                    
                                                a                               
                                                g                               

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
        *  ** ** * **      *  *       *    **  * **      **     ** *            
CAACCTCCAATCACTCACCAACCTCCTGTCCTCCAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATC
                         t        g           a     t       a           c      a
                                                                                
                                                                                

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     **       **    ** **  * **  *             **         *  *       **    **   
TTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTtTGTCCTCT
                 t          c                        c gg              c      a 
                                                        c              g        
                                                                                

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                    * *  **                      *        ** *  *        *      
AATTCCAGG------ATCtTCAACcACCAG---------CacGGGACCATGCaGAACCTGCAcGACTcCTGcTCAAGGAA
gc                c  g  t               gt    t c   cag  t    t  t at  t      c 
                  a     a                     a                                 
                  g                                                             

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  *           *  *  *        ***            ** * *** ******  * **** *  *  ***   
CCTCTATGTATCCCTCCTGTTGCTGTACCAAACCTTCGGACGGAAATTGCACCTGTATTCCCATCCCATCATCcTGGGCT
         t      a  c  t    ta     c t   ta    c                          t      
                t                                                        a      
                                                                                

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  * **  *  * *  *   ** *    ** ** **  *  * *   *  *  *  * **  *  *  **  **     
TTCGGAAAATTCCTATGGGAGTGGGCCTCAGCCCGTTTCTCCTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGT
                   c        t            a                    c                c
                                         t                                      
                                                                                

       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
      ****     **   **   *    **    ** *   * *    ***  * *              *      *
AGGGCTTTCCCCCACTGTTTGGCTTTCAGTTATATGGATGATGTGGTATTGGGGGCCAAGTCTGTACAgCATCTTGAGTC
              t   c       t      g t           g           aa   cgtca  c     ag 
                                   c           t                 t  c           
                                                                                

       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
           ** *       **  *        * **  *     * **        * **       *****     
CCTTTTTACCGCTGTTACCAATTTTCTTTTGTCTTTGGGTATACATTTAAACCCTAACAAAACaAAaAGATGGGGTTACT
     a                      c c   c    cg     c g  t  ccct  g  t  gc g     g  t 
                            a                          g       g           c    
                                                               c                

       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
        *   ****       ** *        **        * **    ** **           *       ** 
CTtTAcATTTcATGGGcTATGTCATTGGAtGTTATGGgTCaTTGCCACAAGAtCACATCAtACAgAAAATCAAAGAaTGT
 cc ga c  t     t   agt     ta  cgg  a  c  a  g  g ca     tgg  ta  gc g c   c  c
    c           g           cg       t              g       a   c     t g   t   
                a                                               t           g   

       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
            **        * **  * **        *        *  * *           *     *  ** **
TTTAGAAAACTTCCTgTTAACAGgCCTATTGATTGGAAAGTcTGTCAACGtATTGTGGGTCTTTTGGGtTTTGCTGCCCC
  cc g     c   a cc tc a  a              a     ga a  c  a  c  cc a  g     c  t  
                          c              g        c                 c        a  
                                         t                          a           

      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 **    **  * *  ** **  *       **  *  *     *    **             *      *        
TTTtACACAATGTGGTTATCCTGCtTTAAtGCCcTTGTATGCaTGTATTCAaTCtAAGCAGGCTTTCACTTTCTCGCCAA
a  c  g  g     g        gc g a   t  a     c  c c   gg gcga        t  c  t      c
g     t                 c        a                 c  c                         
                                                      a                         

      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  *   *    **          ** *       *  **  **          ***       *  *  *    *   * 
CTTACAAGGCCTTTCTGTGTAAACAATACCTGAACCTTTACCCCGTTGCcCGGCAACGGCCAGGTCTGTGCCAAGTGTTT
 g  t   a     t aca c       ta  cc               ta        t t     a            
 c                           t                   a           c                  
                                                                                

      1210      1220      1230      1240      1250      1260      1270      1280
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  **  *  * ***   *  * **        *  ** *         * *  *     *        *     *  **
GCTGACGCAACCCCCACTGGCTGGGGCTTGGTCATGGGCCATCAGCGCATGCGTGGAACCTTTctGGCTCCTCTGCCGAT
     t              t          ct  a                           tc       t a     
                                                               aa               
                                                               gg               

      1290      1300      1310      1320      1330      1340      1350      1360
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 **    *  **        * ** ** ** *   ** *  **   ** *           ** *  **  *        
CCATACTGCGGAACTCCTAGCCGCTTGtTTTGCTCGCAGCAGGTCTGGAGCAAACATTcTCGGGACgGATAACTCTGTTG
      c              a     c            c       g  g   c ca t     t  c     c  a 
                                                       g          a        g    
                                                                                

      1370      1380      1390      1400      1410      1420      1430      1440
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  * ** **    *  **    *  ****** *  * **  *   **** * ** **  *  *  *     *  *  * 
TtCTCTCCCGCAAATATACATCgTtTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTT
 c  t     t  g t   g  a ac              a   a                a                 c
    a                 c                                                         
                                                                                

      1450      1460      1470      1480      1490      1500      1510      1520
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* ****   **      *****   * ***   ** *            * **        *  *     *         
TACGTCCCGTCGGCGCTGAATCCcGCGGACGACCCtTCTCGGGGcCGCTTGGGaCTCTcTCGTCCCCTTCTCCGTCTGCC
        c  a           t           g        t  tc a  gactga      t  ca at c     
                                   c           g     tg   t                     
                                                     c    g                     

      1530      1540      1550      1560      1570      1580      1590      1600
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *  *         **** *  *  ****  **  *   ***       ** **        * **** ** **  * **
GTTtCGaCCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACT
   c at  a                            c                             t           
      c                                                                         
      g                                                                         

      1610      1620      1630      1640      1650      1660      1670      1680
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*       *** **      *            **   **  *  **                                 
TCGCTTCACCTCTGCAC---GTCGCAT------GGAGACCACCGTGAACGCCC---------ACCa---atTc-------
    g                   a           a              t          gt g   caga       
                                                                 c   gg g       
                                                                 t              

      1690      1700      1710      1720      1730      1740      1750      1760
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   *     *    *   *  *  *  ** * *  **           *       *                   * * 
--TTGCCCAAGGTCTTAcATAAGAGGACTCTTGGACTCTCTGtAATGTCAACGACCGACCTTGAGGCATACTTCAAAGAC
  c    a   a    gt     c a   a       t  aacg              t      ca             
                                        c  c                                    
                                                                                

      1770      1780      1790      1800      1810      1820      1830      1840
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *  *  *     *  **   **    *               *                 * * *** * *   **   
TGTTTGTTTAAaGACTGGGAGGAGTTGGGGGAGGAGatTAGaTTAAaGgTcTTTGTAcTAGGAGGCTGTAGGCATAAATT
   c    c  g  a        t c          ccg  g   ct a g a    t g                    
                                    ta          t t                             
                                                                                

      1850      1860      1870      1880      1890      1900      1910      1920
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 ** **   * *                **                             * * *       *        
GGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCtTGTTCATGTCCTACTGTTCAAGCCTCCAA
   g         at     t         g ag     g g   tc  ta     ga    c   t      gg     
                                                 g                              
                                                                                

      1930      1940      1950      1960      1970      1980      1990      2000
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   *** * *    ** *      **  **     *    ***         ** *            *  * *  **  
GCTGTGCCTTGGGTGGCTTTgGGgCATGGACATtGAcCCTTATAAAGAATTTGGAGCTaCtGTGGAGTTACTCTCgTTTT
                    a  a       c c  tt g                  t c   c          a    
                                       a                                   t    
                                                                                

      2010      2020      2030      2040      2050      2060      2070      2080
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  *        *     *                  *                 *              *  *       
TGCCTtCTGACTTCTTTCCTTCaGTACGAGATCTTCTaGATACCGCCTCAGCTCTgTATCGGGAaGCCTTAGAGTCTCCT
     gac  t  t a   g  ca t  t  c  g  t  c     tg     t a t   ac t  t     a   ta 
     atg              g  c  g                  a       c        c  a            
     cg               t                                            g            

      2090      2100      2110      2120      2130      2140      2150      2160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 * *      *    ** *   *     * *              **   *                *     * * ** 
GAGCATTGtTCACCTCAcCATACTGCACTCAGGCAAGCAATtCTtTGCTGGGGGGAacTAATGAcTCTAGCtACCTGGGT
  a    tca tga   t     g  ta          tg c  g  t     a  ct t  atact gt c  t     
                       c              ct a  a           g                       
                                            c           t                       

      2170      2180      2190      2200      2210      2220      2230      2240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 **    **  *                   *               *                *   *           
GGGtGgTAATTTGGAAGATCcAgcATCtAGgGACCTAGTAGTcAGTTATGTcAACACTAATATGGGCCTAAAGTTCAGgC
   aata     ac c  c a atg  c  a  t a   t  tgcc     t  ttaacccg a c t g  a  tc a 
   c cg        t      c          a     g    a            c           t          
      c                                                                         

      2250      2260      2270      2280      2290      2300      2310      2320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
          *** **    **          ** **                       *  * *  **  * ***** 
AACTaTTGTGGTTTCACATTTCTTGTCTCACTTTTGGAAGAGAAACgGTcaTAGAGTATTTGGTGTCTTTCGGAGTGTGG
  t c  a         gc      c  t tg     g a cctgta  tt g  a           c  t         
    t            c          a  c           c  c   c t                           
                                              t   g                             

      2330      2340      2350      2360      2370      2380      2390      2400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *   * * **          *  **     **** * **** *  *      **  *         *   ****     
ATTCGCACTCCTCCAGCTTATAGACCACCaAATGCCCCTATCtTATCAACACTTCCGGAgACTACTGTTgTTAGACGACG
           a agc c        ttat            c       g        a   tg    a     ga a 
             t   a         g                                   g            c   
                           a                                                    

      2410      2420      2430      2440      2450      2460      2470      2480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
           **        *  *  ** ** *   * *  *       *      **   *     *   *  *    
AG------GCAGGTCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAGgTCTCAATCGCCGCGTCGCAGAAGATCTC
 -     c     a        g             a              a   a              c     a  a
             c                                                                  
                                                                                

      2490      2500      2510      2520      2530      2540      2550      2560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  * *  *             *           **  * *     *   *           *  * **            
AATCTCGGGAAt---CTCAATGTTAGTATTCCTTGGACTCATAAGGTGGGaAACTTTACgGGGCTTTATTCTTCTACTGT
     a   gcc    ca c     a   c  c     g  c  a     g gt     t  t     c  c  ct  ac
                                                  t        a                    
                                                                                

      2570      2580      2590      2600      2610      2620      2630      2640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
          *   *     **                * *     ** *   *              *       ** *
aCCTGTCTTTAAcCCTCATTGGAAAACAC---CcTCTTTTCCTAATATACATTTACACCAAGACATtATCAAAAAATGTG
t   a       t  aa c              aa       c  c  t  c  g  t     t  c  t  c g     
g                                t           g                                  
                                                                                

      2650      2660      2670      2680      2690      2700      2710      2720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
            *    *        *     *   *     *            ***  *     * *  **       
AACAaTTTGTAGGcCCACTcACAGTcAATGAgAAAaGAAGAcTGCAATTgATTATGCCTGCTAGGTTTTATCCAAAtGTT
    g  c     t  t  t  ta t     a   c    gt aa    a  c        c  a  c  c  t  gtcc
             g  g        a                                                  a   
                         g                                                  c   

      2730      2740      2750      2760      2770      2780      2790      2800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
** **  * **  *       *  ** ** *   *    ** **     *     *          *             
ACCAAATATTTgCCATTgGATAAGGGTATTAAACCTTATTATCCAGAACATCTAGTTAATCATTACTTCCAAACcAGACA
  t        a  c  a  c     c  c     c  c  c  g  g  ct g              t   g t     
              t                                    g                      a     
                                                   a                            

      2810      2820      2830      2840      2850      2860      2870      2880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *      *     * **  *    **     * *               *    *        *  *   *       *
tTATTTACACACTCTATGGAAGGCGGGTaTATTATATAAGAGAGAAACAACACaTAGCGCCTCATTTTGTGGGTCACCAT
c        t     t   c    a   g t               t t    g            c     a   t   
               g              c                                                 
                                                                                

      2890      2900      2910      2920      2930      2940      2950      2960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     *** *  *      **  ****                                                     
ATTCTTGGGAACAAgAgCTACAGCATGGGGC---------------------------------AGAATCTTTCCACCAG
  a           a ta   gt                                                g        
                                                                       c        
                                                                                

      2970      2980      2990      3000      3010      3020      3030      3040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* * **    **  *  * *   *  * *    **  ** *  *    * *                *  *****   * 
CAATCCTCTGGGATTCTTTCCCGACCACCAGTTGGATCCAGCCTTCAGAGCAAACACcGCAAATCCAGATTGGGACTTCA
                     g  t  t        c     a    a      t  aagc  c           t    
                                                         tta                    
                                                                                

      3050      3060      3070      3080      3090      3100      3110      3120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  *    *          *      *     **    *     **  *     *    *    *          * ** 
ATCCCAACAAGGACACCTGGCCAGACGCCAACAAGGTAGGAGCTGGAGCATTCGGGCTGGGaTTCACCCCACCgCACGGA
              c t      a t              g  g     c     a ca  tc          a      
                a                                g           g           t      
                                                                                

      3130      3140      3150      3160      3170      3180      3190      3200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*      *                   *   *                                                
GGCCTTTTGGGGTGGAGCCCTCAGGCTCAGGGCATAcTACAAACcTTGCCAgCAAATCCGCCTCCTGCcTCtACCAATCG
  t  gc a  a        g  a     a    cga g  c  tg     aa      a     g tag c        
                                    t        c                      t           
                                                                                

      3210      3220      3230      3240      3250      3260      3270  
....:....|....:....|....:....|....:....|....:....|....:....|....:....|..
                    *          *      *                              *  
CCAGTCAGGAAGGCAGCCTACCCCgCTGTCTCCACCTTTGAGAaACACTCATCCTCAGGCCATGCAGTGGAA
t   a ga gc a  a  c  t  t   a    g  gc  c  g t  g  c     a  a  a       c
a                 g  a  a                       a                       
                                                c                       
© 1998-2024Centre National de la Recherche Scientifique logoInstitut national de la sante et de la recherche médicale logoUniversité de Lyon logoLegal notice