HBVdb

Dataset for nucleotide sequence PreS1 of genotype C

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        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                            *                               *   
ATGGGA---GGTTGGTCTTCCAAACCTCGAcA------AGGCATGGGGACgAATCTTTCTGTTCCCAATCCTCTGGGATT
------   ---cat--ca a c      ga                   a  c  g  g  g  a     g        
            -c-  -                                      c  c                    
             -                                                                  
                                                                                

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                        *                *      
CTTTCCCGaTCACCAGTTGGACCCtGCgTTCGGAGCCAAcTCAAACAATCCAGATTGGGACTTCAACCCCAACAAGGATC
   g   agc  t        t  g  a  ta    a  t  c        c        tc                c 
                        a  t                                                    
                                                                                
                                                                                

       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
AcTGGCCAGaGGCAAAtCAGGTAGGAGcGGGAgCaTTCGGGCCaGGGTTCACcCCACCACACGGCgg------------T
ca     t ca  ccgc     g    ta   t c     a  g        t     c     aa-           a-
 t     g      t g                 t                       t                   gc
                                                          g                     
                                                                                

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
CTTTTGGGGTGGAGCCCTCAGGCTCAGGGCATATTGACAACAGTgCCAGcAGCaCCTCCTCCTGCCTCCACCAATCGGCA
              t  g   a    a   gctc a     g ca a atta g           aa tg          
                              c g        c        g  t                          
                                                                                
                                                                                

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
GTCAGGAAGACAGCCTACTCCCATCTCTCCACCTCTAAGAGACAGTCATCCTCAGGCCATGCAGTGGAACTCCAcaACaT
      g  g g   c  g     t                 a cc     g      gca  a     t    gc  t 
                                                                          a   c 
                                                                                
                                                                                

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                             *  
TCCACCAAGCTCTGCTAGAtCCCAGAGTGAGGGGCCTaTActTTCCTGCTGGTGGCTCCAGTTCCGGAACAGTAAACCCT
 t  t  ga    at    c  a a  -ac-------c--tc-c              a     a  g    c  g    
                            --aa  t  g  --a                             g       
                                     t                                          
                                     -                                          

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                           *     *   *          
GTTCCGACTACTGCCTCaCCCATATCGTCAATCTTCTCGAGGACTGGGGACCCTGCACCGAAcATGGAGAgCACaACATC
        c t  t   t    cc  a          t  a  t            g     t       a   cg    
                                                              a                 
                                                                                
                                                                                

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
      **     *  *           * *            *  *         * *             **  *   
AGGATTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCACAGAGTCTAG
                       c           t               a               g g        
                                                                                
                                                                                
                                                                                

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *     *       *               **                            *      *        *  
ACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCACCCACGTGTCCTGGCCAAAATTcGCAGTCCCCAACCTCCAAT
                     g           a      aga                 t                   
                                          g                                     
                                          t                                     
                                                                                

       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
         *           *     *      *                               *     *    *  
CACTCACCAACCTCTTGTCCTCCAAtTTGTCCTGGcTATCGCTGGATGTGTCTGCGGCGTTTTATCATaTTCCTCTTCAT
    t  t      c        g cc        t     t                   c      c           
                                   a                                            
                                                                                
                                                                                

       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 * *      *  *     * *              **  *         *       *                     
CCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTACCAAGGTATGTTGCCCGTTTGTCCTCTACTTCCAGGAA
                 c      a g       g       t gg                        a        t
                                                                                
                                                                                
                                                                                

       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                              *                               * 
------C---ATCAACtACC------------AGCACGGGaCCATGCAAGACCTGCACGAtTCCTGCTCAAGGAACCTCT
          ta g  c  a             ct  a  g  c    ga        a caa        a c a    
          c     a                                           g                   
                                                                                
                                                                                

       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                   *       *                 *    **    *   **               *  
ATGTTTCCCTCTTGTTGCTGTACAAAACCTTCGGACGGAAAcTGCACTTGTATTCCCATCCCATCATCcTGGGCTTTCGC
 c a       a  c                     a    t     c                 g  t t        t
                                                                    a           
                                                                                
                                                                                

      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
         ** *                                                   *              *
AAGATTCCTATGGGAGTGGGCCTCAGTCCGTTTCTCCTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGC
  a                                 a                c                    cc    
                                    t                                           
                                                                                
                                                                                

      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                    *     *        *     *                      *     *      *  
TTTCCCCCACTGTTTGGCTTTCAGTTATATGGATGATGTGGTATTGGGGGCCAAGTCTGTACAACATCTTGAgTCCCTTT
             c          c  cg t           t        g   a                ag      
                                                                                
                                                                                
                                                                                

      1210      1220      1230      1240     
....:....|....:....|....:....|....:....|....:
            *        *           *    *      
TTACCtCTaTTACCAATTTTCTTTTGTCTTTGGGTATACATTTaA
a    g  g             gc a   c           c g 
                                             
                                             
                                             
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