HBVdb::Dataset - Hepatitis B Virus Database

Dataset for nucleotide sequence PreS1 of genotype C

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        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                            *
ATGGGA---GGTTGGTCTTCCAAACCTCGAcA------AGGCATGGGGACgAAtCTTTCTGTTCCCAATCCTCTGGGATT
------   ---cat---a a        ga                   a  c  g  g  g  a     g
            -c-  c                                      c  c
             -


        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                        *
CTTTCCCGaTCACCAGTTGGACCCtGCgTTCGGAGCCAAcTCAAACAATCCAGATTGGGACTTCAACCCCAACAAGGATC
   g   agc  t        t  g  a  ta       t  c        c        tc    t           c
                        a  t



       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

AcTGGCCAGaGGCAAAtCAGGTAGGAGcGGGAgCaTTCGGGCCAGGGTTCACcCCACCACACGGCg------------gT
ca     taca  ccgc     g    ta   t c  t  a  g        t     c     aag           -c
t     g      t g                 t                       t                   a
                                                          g


       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

CTTTTGGGGTGGAGCCCTCAGGCTCAGGGCATATTGACAACAGTgCCAGcAGCaCCTCCTCCTGCCTCCACCAATCGGCA
              t  g   a    a   gctc a     g ca a atga g           aa tg
                              c g        c        t  t



       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

GTCAGGAAGACAGCCTACTCCCATCTCTCCACCTCTAAGAGACAGTCATCCTCAGGCCATGCAGTGGAACTCCAcaACAT
      g  g g   c  g     t                 a cc     g      gca  a     t    gc  t
                                                                          a   c
                                                                              g


       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                             *
TCCACCAAGCTCTGCTAGAtCCCAGAGTGAGGGGCCTaTActTTCCTGCTGGTGGCTCcAGTTCCGGAACAGTAAACCCT
t  t  ga    at    c  a a  -ac-a-----t--tcac              a     a  g   ac  g
                            --a-  t  c  --
                                     g
                                     -

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

GTTCCGACTACTGCCTCaCCCATATCGTCAATCTTCTCGAGGACTGGGGACCCTGCACCGAAcATGGAGAgCACaACATC
        c t  t   t    cc  a          t  a  t            g     t       a   cg
                                                              a



       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
      **        *                                         *
AGGATTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCACAGAGTCTAG
                       c           t        c        a               g g




       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*             *               **                                      *
ACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCACCCACGTGTCCTGGCCAAAAT---TcGCAGTCCCCAACCTCC
                     g           a      aga                    t
                                          t
                                          g


       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
            *                        *
AATCACTCACCAACCTCTTGTCCTCCAAtTTGTCCTGGcTATCGCTGGATGTGTCTGCGGCGTTTTATCATaTTCCTCTT
       t  t      c        g c         t     t                   c      c
                                      a



       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                *     * *                                    *
CATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTACCAAGGTATGTTGCCCGTTTGTCCTCTACTTCCAG
                    c      a g       g    t gtagg                        a




       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

GAA------C---ATCAACtA------------CCAGCACGGGACCATGCAAGACCTGCACGAtTCCTGCTCAAGGAACC
  t          ta    c-c          a-a ct  a  g  c    ga        a ca         a c a
             c     a              -                            g



       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                      *       *     *                 *    *   **
TCTATGTTTCCCTCTTGTTGCTGTACAAAACCTTCGGACGGAAAcTGCACTTGTATTCCCATCCCATCATCcTGGGCTTT
    c         a  c                    ta    t     c                 g  t t
                                                                       a



      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
            *  *
CGCAAGATTCCTATGGGAGTGGGCCTCAGTCCGTTTCTCCTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAG
  t  a                                 a                c                    cc
                                       t



      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                       *     *        *                                  *
GGCTTTCCCCCACTGTTTGGCTTTCAGTTATATGGATGATGTGGTATTGGGGGCCAAGTCTGTACAACATCTTGAgTCCC
                c          c  cg t           t        g   a                ag




      1210      1220      1230      1240
....:....|....:....|....:....|....:....|....:...
               *
TTTTTACCtCTaTTACCAATTTTCTTTTGTCTTTGGGTATACATTTaA
   a    g  g      c      gc a   c           c-g-
                                              -