HBVdb

Dataset for nucleotide sequence PreS1 of genotype B

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        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                 *               *    *     **       **  *      
ATGGGAGGTTGGTCTTCCAAACCTCGAAAAGGCATGGGGACAAATCTTTCTGTCCCCAATCCcCTGGGATTCTTcCCCGA
              c  a         c             g  c  cg c           tt        c t     
                                                              a                 
                                                              g                 

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 ** **       *                              * *                                 
TCAtCAGTTGGACCCTGCATTCAAAGCCAACTCaGAaAATCCaGATTGGGACCTCAAcCCgCACAAGGACAACTGGCCGG
c  c        t  a tg           t  cacc     c        tt    t  at        tct       
                                                                                
                                                                                

       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                    *     *                       *               *  *       *  
ACGCCAACAAGGTGGGAGTGGGAGCATTCGGGCCaGGgTTCAccCCtCCCCATGGGGGaCTGTTGGGGTGGAGCCCTCAg
 tt  cgg          ca             tg  ag  gtt  a  a  c     ct ag       at     a
                                              g  t                             c
                                              c                                 

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                   *            
GCTCAGGGCcTACTCACAACTGTGCCAGCAGCtCCTCCTCCTGCCTCCACCAATCGGCAGTcAGGAAGGC---AGCCTAC
     a   a gt tg  ta c     a ga a      t                    gtc   c  a   c   a  
              a      a                                                          
                                                                                

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                 *                                                              
TCCCtTaTCTCCACCTCTAAGgGACACTCATCCTCAGGCCATGCAGTGGAACTCCACCACtTTCCAcCAAA---cTCttc
a   c ga             a  tt g     a  a  ag aagt     t  tc a ag  t  t   gctct  a--
    a tw                                                    c     a           g 
      c                                                                       a 

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                               **  ** *       **           *        *           
aAGATCCCAGAGTCAGGGCcCTGTACtTTCCTGCTGGTGGCTCCAGTTCAGGAACAGTGAgCCCTGCTCAGAAtACTGtC
-g  c  aca         t  a  tc c                      ag tc  a a     t     cct   c 
 -                       gy                                                     
                                                                                

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*        *        *        *  ***  *   *     *    *      *     *    *         * 
TCTgCCATATCGTCAAtCTTaTCGAAGACTGGGGACCCTGTACCGAACATGGAGAACATCGCATCAGGACTCCTAGGACC
  at   c   a    c  cc    c              cg     t            t         a   c     
  gc               yg    m                                  a                   
   a                                                                            

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*         *  *          *   *                                 * *    *         *
CCTGCTCGTGTTACAGGCGGGGTTTTTCTtGTTGACAAAAATCCTCACAATACCACAGAGTCTAGACTCGTGGTGGACTT
        ga                   c                        g g                       
        c                    y                                                  
                                                                                

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
          *                   *       *    *   * ** *   * ** *   * *  *  *      
CTCTCAaTTTTCTAGGGGgAACACCCGTGTGTCTTGGCCAAAATTCGCAGTCCCAAATCTCCAGTCACTCACCAACcTGT
      g           ag       a     c                    c        a        t   t   
      r           rc             g                                              
                                                                                

       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   ** *     ** **      *              ** *      * * *   **  * *      *          
TGTCCTCCaATTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTGCATCCTGCTGCTATGCCT
       ag c         c     t       a                  a     t                    
          y                                          m                          
                                                                                

       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *          *  *     *            *       **     **                      *      
CATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCATCAACaACCAGCA
     c                                                cc          c  g  c       
                                                      g           g     g       
                                                                        t       

       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
        *          **        *          **        *   *  * *          *  *      
CCGGACCATGCAaAACCTGCACaACTCCTGCTCAAGGAACCTCTATGTTTCCCTCATGTTGCTGTACAAAACCTACGGAC
 g          gg  a     gg ga      gc         tc                   c       t   t
                      r   t                                                     
                                                                                

       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
          *   ** ** * **       * *    **           *   *      **         * **   
GGAAACTGCACCTGTATTCCCATCCCATCATCTTGGGCTTTCGCAAAATACCTATGGGAGTGGGCCTCAGTCCGTTTCTC
     t                       g  c          t     t                              
                                                                                
                                                                                

      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
      *  **  *     *       **       **   * *           *   *         *     **   
TTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTCTGGCTTTCAGTTATATGGATGA
                   g                c              t   t             c  t     
                                                                                
                                                                                

      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  * *   * **  *              *     *                         *                  
TGTGGTtTTGGGGGCCAAGTCTGTACAACATCTTGAGTCCCTTTATgCCGCTGTTACCAATTTTCTTTTGTCTTTGGGTA
 a    a      a    aa    g     c     a   a     a           c        g a   c    c 
                  r           y                                    c            
                                                                                

         
....:....
  *      
TACATTTAA
     c g 
         
         
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