HBVdb::Dataset - Hepatitis B Virus Database

Dataset for nucleotide sequence PreS1 of genotype B

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        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                             *       **  *
ATGGGAGGTTGGTCTTCCAAACCTCGAAAAGGCATGGGGACAAATCTTTCTGTCCCCAATCCcCTGGGATTCTTcCCCGA
              c  a         c             g  c  cg c           tt        c t
                                                              a
                                                              g

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**          *       *                      * *        *
TCAtCAGTTGGACCCTGCATTCAAAGCCAACTCaGAaAATCCaGATTGGGACCTCAACCCgCACAAGGACAACTGGCCGG
   c        t  a  g           t  ca c     c        tt    t  at         ct     aa



       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                    *     *                 *     *               *  *       *
ACGCCAACAAGGTGGGAGTGGGAGCATTCGGGCCaGGgTTCAccCCtCCCCATGGGGGACTGTTGGGGTGGAGCCCTCAg
tt  cgg           a        t    tg  a   gtt  a  a  c     ct ag    a    at     a
                                              g  t                             c
                                              c

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                   *
GCTCAGGGCcTACTCACAACTGTGCCAGCAGCTCCTCCTCCTGCCTCCACCAATCGGCAGTcAGGAAGGCAGCCTACTCC
     a  ta gt tg  ta c     a ga a      t                    gtc   c  ac   a  a
              a      a


       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

CtTaTCTCCACCTCTAAGgGACACTCATCCTCAGGCCATGCAGTGGAACTCCACCACtTTCCAcCAAACTCTTCAA---G
c ga             a  tt g     a  a  ag aagt     t  tc a ag  t  t   g    g  g
a t                                                     c
   c

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                           * *  ** *                      *      *
ATCCCAGAGTCAGGGCcCTGTACtTTCCTGCTGGTGGCTCCAGTTCAGGAACAGTGAgCCCTGCTCAGAAtACTGtCTCT
    aca         t  a  tc c                      ag tc  a a     t     cct   ca  a
                                                                               g


       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     **        *        *  ***  *   *    **    *      *     *    *         * *
gCCATATCGTCAAtCTTATCGAAGACTGGGGACCCTGTACCGAACATGGAGAACATCGCATCAGGACTCCTAGGACCCCT
t   c   a    c  cc    c              cg     t            t         a   c
c                g                                       a
a

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
          *                                                * *    *         *
GCTCGTGTTACAGGCGGGGTTTTTCTtGTTGACAAAAATCCTCACAATACCACAGAGTCTAGACTCGTGGTGGACTTCTC
     ga                c  c                        g
     c                    y


       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
       *                   *       *    *   *    *     ** *   * *  *  *
TCAaTTTTCTAGGGGgAACACCCGTGTGTCTTGGCCAAAATTCGCAGTCCCAAATCTCCAGTCACTCACCAACcTGTTGT
   g           ag       a     c                             a        t   t
   r           rc


       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
** *  *  ** *       *              **    *   * *     **        *              *
CCTCCaATTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTGCATCCTGCTGCTATGCCTCAT
    ag c         c     t       a                  a     t



       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
         *        **        *  *       **     **
CTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCATCAACaACc-------
  c                                                cc          c  g  c  -
                                                   g           g     g
                                                                     t

       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
              *          **        *          **        *   *  * *
--AGCACCGGACCATGCAaAACCTGCACaACTCCTGCTCAAGGAACCTCTATGTTTCCCTCATGTTGCTGTACAAAACCT
c     g   t      gg  a     gg ga      gc         tc         c  c        c
                            r


       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                *   **   ** **         *    *            *   *       *         *
ACGGACGGAAACTGCACCTGTATTCCCATCCCATCATCTTGGGCTTTCGCAAAATACCTATGGGAGTGGGCCTCAGTCCG
t         t                       g  c          t     t



      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**         *   *        *       **        *     *           *   * *       *
TTTCTCTTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTCTGGCTTTCAGTTATAT
                 c         g                c              t   t             c



      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**     * *     **  *              *     *                                    *
GGATGATGTGGTtTTGGGGGCCAAGTCTGTACAACATCTTGAGTCCCTTTATgCCGCTGTTACCAATTTTCTTTTGTCTT
t      a    a      a g  aa    g     c     a   a     a           c       gg a   c
       t                r           y                                    c


      1210
....:....|....:

TGGGTATACATTTAA
    c      c---
             g