HBVdb::Dataset - Hepatitis B Virus Database

Dataset for nucleotide sequence P of genotype B

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        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                              *
ATGCCCCTATCTTATCAACACttccggaaaCtactgtTgtTagacga------aGAGGCAGGTCCCCTAGAAGAAGAACT
           c    c  g ------ttc ggaaac ac gttgttagacgac--t     a           c
                            g               aa-  gg  -  c
                                             c

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* **   *              *       *      *     *                              *
CCCTCGCCTCGCAGACGAAGGTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGG------AA---TCTCAATGTTA
     a              a        a            c     a               gc   c ct



       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
              *  *  *            *          *           **       *   *
GTATTCCTTGGACaCATAAGGTGGGAAACTTTACGGGGCTTTATTCTTCTACGGTACCTtgCTTTAATCCTaAaTGGCAA
a   c  g  c  t    ga        t           c  c        t     gaa   c      gct
             g                                      a      gt          c c


       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   **                         *   *              *          *   *  *
ACTCCTTCTTTTCCTGACATTCATTTGCAGGAGGACATTGTTGATAGaTGTaAgCAATTTGTGGGgCCCCTtACAGTAAA
     c  c     ca t  a     aaga  aa t  ca ca c  g   gca        a  a     c  cacg
              g                                    c                   a
              a

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
        *     *     *     ****        *     *          *  **             *   * *
TGAAAAcAGGAGACTAAAATTaATtATGCCTGCTAGgTTtTATCCcAATGTTACtAAATATTTGCCCTTAGATAAAGGgA
c    ca  a   t t  g  g  c     c     a  c t   t cgacc  c     c  a  t  g  c     a
     tt        g        a                       c g               a


       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*        * ** **     *          * **      *       *     ** *        *        **
TcAAACCgTATTATCCAGAGcATGTAGTTAATCATTACTTCCAGACgaGACATTATTTACAcACTCTTTGGAAGGCGGGt
t     t        c  at c  g   g       t  t  a  ac g        g  t t   g        a  g
       c                                      t                                a
       a

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*    **     * *   *          **  * *                 *  ***   **      *
ATCTTATATAAAAGAGAGtCcACACGTAGCGCCTCATTTTGCGGGTCACCATATTCTTGGGAACAAGAtCTACAGCATGG
g t        g     aa a  g ac  t  t     c at                       c  ga    t
  a                 g
                    t

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                             *            *    *  *     **   *   **  *       *
GAGGTTGGTCTTCCAAACCTCGAAAAGGCATGGGGACAAATCTTTCTGTCCCCAATCCcCTGGGATTCTTcCCCGATCAt
          c  a         c             g  c  c  c           tt        c t        c
                                                          a
                                                          g

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
         *       *    *  *              * *        *        *   *
CAGTTGGACCCTGCATTCAAAGCCAACTCaGAaAATCCaGATTGGGACCTCAACCCgCACAAGGACAACTGGCCGGACGC
        t  a  g           t  ca c     c        tt    t  at        tct        tt



       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                *     *                 *     *   *
CAACAAGGTGGGAGTGGGAGCATTCGGGCCaGGgTTCAccCCtCCCCATGGGGGACTGTTGGGGTGGAGCCCTCAgGCTC
cgg          ca            ttg  ag  gtt  a  a  c     ct ag    a    at     a
                                          g  t                             c
                                          c

       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                               *
AGGGCcTACTCACAACTGTGCCAGCAGCTCCTCCTCCTGCCTCCACCAATCGGCAGTcAGGAAGGCAGCCTACTCCCtTa
a   a gt tg  ta c     a ga a                           gtc cgc  ac   a  a   c g
          a                                                                  a t
                                                                               c

       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
          *
TCTCCACCTCTAAGgGACACTCATCCTCAGGCCATGCAGTGGAACTCCACCACtTTCCAcCAAACTCTTCAA---GATCC
a    g        a  tt g     a  a  ag aa t     t  tc   ag  t  t   g    g  g     c
                                                     c     a


       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                       ***  ** *       **           * ***    *  *        *
CAGAGTCAGGGCcCTGTACtTTCCTGCTGGTGGCTCCAGTTCAGGAACAGTGAgCCCTGcTCAGAAtACTGtCTCTgCCA
aca         t     tc c                      ag tc  a a     t     cct   c   at
                  g                                                        gc
                                                                            a

      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**        *        *  ***  *   *    **    *      *     *    *         * *   *
TATCGTCAAtCTTaTCGAAGACTGGGGACCCTGTACCGAACATGGAGAACATCGCATCAGGACTCCTAGGACCCCTGCTC
c   a    c  cc    c              cg     t            t         a   c
             g                                       a


      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   *  *          *   *                                 * *    *      *  *
GTGTTACAGGCGGGGTTTTTCTtGTTGACAAAAATCCTCACAATACCACAGAGTCTAGACTCGTGGTGGACTTCTCTCAa
ga    c              c                        g g                             g
c                    y


      1210      1220      1230      1240      1250      1260      1270      1280
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   *                 * *       * *  **  * ** *   * ** *   * *  *  *         ** *
TTTTCTAGGGGgAACACCCGTGTGTCTTGGCCAAAATTCGCAGTCCCAAATCTCCAGTCACTCACCAACcTGTTGTCCTC
           agc      a     c                             a        t   t
            c


      1290      1300      1310      1320      1330      1340      1350      1360
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  *  ** **    * **             ** *  *   * * *   *** * * * *  *           *
CaATTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTGCATCCTGCTGCTATGCCTCATCTTC
g c         c             a                  a     t                         c



      1370      1380      1390      1400      1410      1420      1430      1440
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  *  *  *     **        *  *       ***    **                      *
TTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCATCAACaACCAGCACCGGACC
                       c                       cc          c  g  c        g   t
                                               g           g     t
                                                                 g

      1450      1460      1470      1480      1490      1500      1510      1520
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*          **        * *        **        *  **  * *          *  *
ATGCAaAACCTGCACaACTCCTGCTCAAGGAACCTCTATGTTTCCCTCATGTTGCTGTACAAAACCTACGGACGGAAACT
     gg  a     gg ga      gc         tc         c           c       t         t
                   t


      1530      1540      1550      1560      1570      1580      1590      1600
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   *   ** **** **       * *    **           * * *      **         ****         *
GCACCTGTATTCCCATCCCATCATCTTGGGCTTTCGCAAAATACCTATGGGAGTGGGCCTCAGTCCGTTTCTCTTGGCTC
                      g  c          t     t                              a



      1610      1620      1630      1640      1650      1660      1670      1680
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  **  *  *  *   *   **       **   * *           *   * *       *     **   * * *
AGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTCTGGCTTTCAGTTATATGGATGATGTGGTt
              g                               t   t             c  t      a    a



      1690      1700      1710      1720      1730      1740      1750      1760
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* **  * *        *   *     *                         *  *       *         *
TTGGGGGCCAAGTCTGTACAACATCTTGAGTCCCTTTATgCCGCTGTTACCAATTTTCTTTTGTCTTTGGGTATACATTT
        g  aa    g     c     a   a     a           c        g a   c    c      c
                                                            c


      1770      1780      1790      1800      1810      1820      1830      1840
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
          *         * *****  *     *         *            *        *   *     * *
AAACCCTCAcAAAACAAAAAGATGGGGaTAtTCCCTTAAcTTCATGGGATATGTAATTGGgaGTTGGGGCACaTTgCCaC
g  t   a t     c   c t     c  c      c t  t     g   a t     ag c     tt c  a  c
         g     g           t                                tt       a  t     g
               t                                                              t

      1850      1860      1870      1880      1890      1900      1910      1920
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     *           *                                       *  *  *  ***      * *
AgGAACATATTGTacaaAAAATCAAAatgTGTTTTAGgAAACTTCCTGTAAACAGgCCTATTGATTGGAAAGTaTGTCAA
ac c  c  ca gttg   c   c caa      caa  g           tc a  c           g  g  c
             t cc       g tc                                             c
               g

      1930      1940      1950      1960      1970      1980      1990      2000
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    *     *       **    *  ** ** **  * ** ** **                    * *      *
CGAATTGTGGGTCTTTTGGGgTTtGCcGCcCCTTTcACgCAATGTGGaTATCCTGCTTTAATGCCTTTATATGCATGTAT
a c     a  a   c a  a  c  t  t  c  t  a        t  c     cc g a      g        c
                             a                 g


      2010      2020      2030      2040      2050      2060      2070      2080
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
             *   *    ** *         *        *  *                         **
ACAAGCaAAACAGGCTTTTACTTTCTCGCCAACtTAcAAGGCCTTTCTaagtAAACAgTATCTGAACCTTTACCCCGTTG
t  ct tc          c     t  a  g  c  t     t  ct ccacccc  a  ct  cc
c     g                       c  g              gt           a  g
      c

      2090      2100      2110      2120      2130      2140      2150      2160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     **  *     *    **   *    *           *  * **  * ** **   *    * *     *   *
CTCGGCAACGGcCtGGTCTGTGCCAAGTGTTTGCTGACGCAACCCCCACTGGtTGGGGCTTGGCCATaGGCCATCAGCGC
c         t a     a                 t              c           t  c
g                                                              a  t
                                                                   g

      2170      2180      2190      2200      2210      2220      2230      2240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
       *             *      *    *                          **    * **
ATGCGTGGaACCTTTGTGTCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCCGCTTGTTTTGCTCGCAGCaGGTCTGG
g a  c  g              gt a  a        g           g  t  c     c         c
        c                    t        c              a


      2250      2260      2270      2280      2290      2300      2310      2320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
        *  * **  *    ** *   *  *     * *         *  *    *  *   *     *     **
gGCaAAACTcATCGGGACTGACAATTCTGTCGTgCTcTCCCGCAAgTATACATCaTTTCCATGGCTGCTAGGCTGTGCTG
a  g cc  t     a  c        g  t  c  t     t  a  c  c  g  c              g   a
                           c     a  g                 c                 t
                                 t  a

      2330      2340      2350      2360      2370      2380      2390      2400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* *    *         ** *  *  *        **  *           *  *           *      **
CCAACTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCCGCGGACGACCCCTCCCGGGGCCGC
          a  a              c  c        c  a           t              t     t
                                                                      a


      2410      2420      2430      2440      2450      2460      2470      2480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   *           *                 *     *         *          *    *          *
TTGGGGCTCTACCGCCCGCTTCTCCGcCTgttGTACCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTC
  a     t  t        c     t  accc tt ag  at t        t                t
        g                    cg       t                               c


      2490      2500      2510      2520      2530      2540      2550
....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**       **     *           * **          *     *       **
TGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAgACCACCGTGA
        t  gc ca    t                                 g    a       ---
                    g