HBVdb::Dataset - Hepatitis B Virus Database

Dataset for nucleotide sequence PreS1 of genotype A

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        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                        *      **  * **   **             *  *    **  *   *  **
ATGGGAGGTTGGTcAtCaAAACCTCGCAAAGGCATGGGGACGAAtCTTTCTGTTCCCAAcCCTCTGGGATTCTTTCCCGA
            at c c cg                       c  a     c  a  t  g         c c
               g                               g


        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*   *    *     *  **        *                  * *                      **
TCATCAGTTGGACCCTGCATTCGGAGCCAAcTCAAACAATCCAGAtTGGGACTTCAACCCCATCAAGGACCACTGGCCAg
      ac    t  g              t           g  c           t a gc   a  t  t     tc
               a                                              a                a
               c

       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
            *                 *  *       *   *  *     *     *    *
cAGCCAAcCAGGTAGGAGTGGGAGCATTCGGgCCAGGGtTCACcCCtCCACACGGcGGTgTTTTGGGGTGGAGCCCTCAG
at     t     g           t  t  c      c    t  c        a   a cc
g


       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                          *  *
GCTCAGGGCATATTGaCcACAGTGtCAaCAaTTCCTCCTCCTGCCTCCACCAATCGGCAGTCAGGAAGGCAGCCTACTCC
     a    cgc  g tcattc c ggt g g     ca        g          a  c     a     c  a
                 a


       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|

CATCTCTCCACCTCTAAG------AGACAGTCATCCTCAGGCCATGCAGTGGAATTCCACtGCcTTCCACCAAGCTCTGC
   t           g              c           agca  a  c cc g   aaat  t  tag a g  a
                                                      a


       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                *  **    *    *               *  *
AgGATCCCAGAGTCAGGGGtCTGTATtTTCCTGCTGGTGGCTCCAGTTCAGGAACAgTaAACCCTGcTCCgAATATTGCC
a  c    ag  a a   c      c c                a        t cac       t   a c  c  ta
                                                                      c


       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   *              *           * *      *          *                    *
TCTCACATCTCGTCAATCTCCgCGAGGACTGGGGACCCTGtgaCGAACATGGAGAACATCACATCAGGATTCCTAGGACC
        a  a    c   at   c  t           cacta c                      c     a
                         a               tt
                                          g

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
          * **  * *         * **    ** * ***      *               *  *         *
CCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTT
                          c           a               a



       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    *                     *        ** *    *  **    *** *    **  * **  *  **
CTCTCAATTTTCTAGGGGGatCACCCGTGTGTCTTGGCCAAAATTCGCAGTCCCCAACCTCCAATCACTCACCAACCTCC
      g   c       acc t          g                                             t
                   gg


       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    * *  *   *   * * *  *      **     ** ** ** *  **    *  ** *  ***      **   *
TGTCCTCCAATTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATATTCCTCTTCATCCTGCT---GCTATG
          c         c     t



       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* *          **        **  *       *                          *
CCTCATCTTCTTATTGGTTCTTCTGGATTAtCAAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCaA------caa
            g     a  g     c gc  g                                   cgcaac a---
                                                                     t-


       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                          * **        *  *     *   **      *  **        *
CAACCAGtACGGGACCaTGCAaAACCTGCACGACTCCTGCTCAAGGCAACTCTATGTTTCCCTCATGTTGCTGTACAAAA
-c  g  c     ta c    gg                         c     c a             t



       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     **  *  *    * *           *           **  *  *      * * ** ***     * *  **
CCTACGGAtGGAAATTGCACCTGTATTCCCATCCCATCgTCcTGGGCTTTCGCAAAATACCTATGGGAGTGGGCCTCAGT
    t   c           t                 a  t                t        g           c
                                         a


      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     **         *     *  *     *     *     **               *        *  *  *
CCGTTTCTCtTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTTTGGCTTTCAGcTA
         a                                     c              t   c       t  t
         c


      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     * *            *  *             *  *
TaTGGATGATGTGGTAtTGGGGGCCAAGTCTGTACAgCATCgTGAGtCCCTTTATACCGCTGTTACCAATTTTCTTTTGT
g    c   a t   c          aa   cg  a  c t    g      t       a    t           t
            c                    t


      1210
....:....|....:...

CTcTGGGTATACATTTAA
  t    c      c