HBVdb

Dataset for nucleotide sequence Genomes of genotype A

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        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                        *               * *  **    * *  ***     
TTCCACtGCcTTCCACCAAGCTCTGCAgGATCCCAGAGTCAGGGGtCTGTATtTTCCTGCTGGTGGCTCCAGTTCAGGAA
c     aa t  t  ta  a g  a  a       ag    a   c      c c                a        
                                                                                
                                                                                

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
       ** **        * *   *  *          *  **     * *   * ** ** **              
CAgTaAACCCTGcTCCgAATATTGCCTCTCACATCTCGTCAATCTCCgCGAGGACTGGGGACCCTGtgaCGAACATGGAG
t c c g     t  aa c  c  ta        a  a    c    t   c  t           cact  c       
  t             c                                  a               tt           
                                                                    g           

       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**      **       *  *   * **  *     ****  * **    **  * **    ** * ***  * *** * 
AACATCACATCAGGATTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACC
               c                                       c        a               
                                                                                
                                                                                

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
   ** *** * ** ** ** * ***    *  **       **        * ***   *** ***  *****    **
GCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGatCACCCGTGTGTCTTGGCCAAAATTCGCAGTCCC
a                               g           acc ta         g                    
                                             gg                                 
                                              a                                 

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
****   ** ***** ** *** *   **** *  *  ***  *** * **    ****  * ****** ** *  *** 
CAACCTCCAATCACTCACCAACCTCCTGTCCTCCAATTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATA
                         t          c         c     t                           
                                                                                
                                                                                

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* ***** ** *** *    ** *** * ********  ****   *   **  *  **   * * **   *** * * *
TTCCTCTTCATCCTGCT---GCTATGCCTCATCTTCTTATTGGTTCTTCTGGATTATCAAGGTATGTTGCCCGTTTGTCC
                                      g     a  g     c gc  g     a              
                                                                                
                                                                                

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
         * ** *     * *      *        **   *  * **      * ** *     *   ***     *
TCTAATTCCAGGATCaACAACAACCAGtACGGGACCaTGCAAAACCTGCACGACTCCTGCTCAAGGCAACTCTATGTTTC
             a c     c     c      a c    gg          g                    c     
               t                                                                
                                                                                

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  ** ** ** ****    *     **  *  *   **** ***    *  **** *  ** ***  ** *  **  * *
CCTCATGTTGCTGTACAAAACCTACGGAtGGAAATTGCACCTGTATTCCCATCCCATCgTCcTGGGCTTTCGCAAAATAC
    c     t     c       t   c           t                 a  t                t 
                                        a                                       
                                                                                

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*******  * ** ***** **** ***  **   ** **  ** *   * * ** ** **  ** * *       *** 
CTATGGGAGTGGGCCTCAGTCCGTTTCTCtTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCC
       g           c         a                    c                c            
                             c                                                  
                                                                                

       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*   *  ***  ** ** **  * ** **    **   ***  *     *     * ** *  *      **        
CACTGTTTGGCTTTCAGcTATaTGGATGATGTGGTAtTGGGGGCCAAGTCTGTACAgCATCgTGAGtCCCTTTATACCGC
  t        c  t  t   g        a c  tc          aa    g  a  c t   ag      t      
                              t                                                 
                                                                                

       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* *     ***** *        ****  * **  * *   *   *** *         **** **  * **     * *
TGTTACCAATTTTCTTTTGTCTcTGGGTATACATTTAAACCCTAACAAAACAAAaAGATGGGGTTATTCCCTaAAcTTCA
      t               t    c      c    t           t  g        c  c     gc t  t 
                                                   c                    t       
                                                                                

       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     **    ***       *     *  * **  * *  *  *        **  * *     ** **          
TGGGtTAcaTAATTGGAAGTTGGGGaACaTTGCCACAgGATCATATTgTACAAAAgATCAAAcACTGTTTTAGAAAACTT
    a  tg       c        tt tc a     a  g     ca       ac t   agt     cc g     g
    g                    g  g                                 t a               
    c                                                         g                 

       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**  *  *  * **    *******   * ** **     * *   *  *  * **  * *      * *   * ** **
CCTGTtAAcaGgCCTATTGATTGGAAAGTATGTCAaAGaATTGTGGGTCTTTTGGGCTTTGCtGCtCCATTTACACAATG
  ca c  tc a   g c           g     gc g     a                 c  a  c  c        
     a           a           c                                a  c              
                                                                                

      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *  ** ** **  * *  **  * *   *    ** **  * *    *** *     *  ** *     *      ** 
TGGaTAtCCTGCcTTAATGCCTTTGTATGCATGTATACAAGCtAAACAGGCTTTcACTTTCTCGCCAACTTACAAGGCCT
   t  c  g  a        cc a              g  g gg        t     t                   
   g        t                             a                                     
                                                                                

      1130      1140      1150      1160      1170      1180      1190      1200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*  *          **       *  **  * * * *  * ** **    *     ** ** **  **** **  ***  
TTCTAAGTaAACAGTAcATGAACCTTTACCCCGTTGCtCGGCAACGGCCTGGTCTGTGCCAAGTGTTTGCTGACGCAACC
    gca ccc  a  tc  g                c         t    c  a                 t     t
                                                                                
                                                                                

      1210      1220      1230      1240      1250      1260      1270      1280
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
****  ** *****  *  *  * ** *  *  *** *    *      *   * **  *       * *   * ** **
CCCACTGGcTGGGGCTTGGCcATaGGCCATCAGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGA
        t           t  c  a              c                                      
                    g  t                                                        
                                                                                

      1290      1300      1310      1320      1330      1340      1350      1360
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 ** *  *  *  **  * **  ***   *   *** *      *  * ** **  *  * *  *   *     *  *  
ACTCCTAGCcGCTTGTTTTGCTCGCAGCCGGTCTGGAGCAAAgCTCATcGGaACTGAcAATTCTGTCGTCCTcTCgCGGA
         t  c               a       g  g ca  t  a  g     t  c           t  t    
         a                                c     t  c                            
                                                                                

      1370      1380      1390      1400      1410      1420      1430      1440
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
      *     * **  ** *  *    ***  *  ***  **** ** *   * **                 * ** 
AATATACATCgTTTCCATGGCTGCTAGGcTGTACTGCCAACTGGATcCTTCGCGGGACGTCCTTTGTTTACGTCCCGTCG
       c  a  c              t   g             t        a           c     t     a
       t  c                 g                 a                                 
          t                                                                     

      1450      1460      1470      1480      1490      1500      1510      1520
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
    ******   * ** ** ** **       *   *     * *  ***** ** **  * *     *  *       
GCGCTGAATCCCGCGGACGACCCCTCtCGgGGCCGCTTGGGaCTCTcTCGTCCCCTTCTCCGTCTGCCGTtCCagCCGAC
           t        t  t  ga a  t  t     ga g a                       at gt     
                          a  c           c  t                             a     
                          c              t                                      

      1530      1540      1550      1560      1570      1580      1590      1600
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                   *   *    * ***    ******   *  *   **                    **** 
CACGGGGCGCACCTCTCTTTACGCGGTCTCCCCGTCTGTGCCTTCTCATCTGCCGGtCCGTGTGCACTTCGCTTCACCTC
                          a                     c       a              a        
                                                                                
                                                                                

      1610      1620      1630      1640      1650      1660      1670      1680
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
**   *   * ***   **  *   * *                    ** **   * **  * *      *        
TGCACGTTGCATGGaGACCACCGTGAACG------CCCATCAGATCCTGCCCAAGGTCTTACATAAGAGGACTCTTGGAC
              ca             ccc   --- c  agg t              t     c            
                                                                                
                                                                                

      1690      1700      1710      1720      1730      1740      1750      1760
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                  * * ****** ** ** ******  *    * *  *   *******                
TCCCAGCAATGTCAACGACCGACCTTGAGGCCTACTTCAAAGACTGTGTGTTTAAgGACTGGGAGGAGcTGGGGGAGGAG
  t                            t                 a     a           at           
                               a                                                
                                                                                

      1770      1780      1790      1800      1810      1820      1830      1840
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                             ** **         *                                    
ATTAGGTTAAaGgTCTTTGTATTAGGAGGCTGTAGGCAtA---AATTGGTCTGCGCACCAgCAcCATGCAACTTTTTCAC
 cg   c   t a t a    c                g              tt     ttct c              
 a                                                            t  t              
                                                                                

      1850      1860      1870      1880      1890      1900      1910      1920
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                          *       *** * ***   *   *** * * *  ** ***  * ****    *
CTCTGCCTAATCATCTCTTGTaCATGTCCCACTgTTCAAGCCTCCAAGCTGTGCCTTGGgTGGCTTTGGGGCATGGACAT
                 c   t       t   t                         a       a  a         
                                 c                                              
                                                                                

      1930      1940      1950      1960      1970      1980      1990      2000
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 ***     ***  * *  **  *           *    *  **  *  *    *  *  *  **          **  
TGACCCTTATAAAGAATTTGGAGCTACTGTGGAGTTACTCTCgTTTTTGCCTTCTGACTTCTTTCCTTCcGTCaGaGATC
c     g                  t   c   a     t  a         ca   t  t a      a cac g    
                                          t         g                   t       
                                                    a                           

      2010      2020      2030      2040      2050      2060      2070      2080
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*       **        *           *     *          *         *     * ** ** **     **
TcCTaGAcACcGCCTCAGCTCTgTATCGaGAAGCCTTAGAGTCTCCTGAGCATTGCTCACCTCACCATACtGCACTCAGG
 a  t  t  a  a      t a t   g  t  ac g  a  a  g        ta cg g  t     a   a     
 t  g     t  t        c                                   t           c         
                                                                                

      2090      2100      2110      2120      2130      2140      2150      2160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  *          * ****   *  *        *       **** **     **  *     *        *     *
CAAGCCATTCTCTGCTGGGGGGAATTgATGACTCTAGCTACCTGGGTGGGTAATAATTTGgAAGATCCAGCATCcAGGGA
     ag  g a       t   tg a c  a t   gct          c c      ac c  c at     a  a  
           t            c                                                 t     
                                                                                

      2170      2180      2190      2200      2210      2220      2230      2240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
     *  *     ** * **          **  * *   *  *           **    *    ** *        *
TCTAGTAGTcAATTATGTTAATACTAACATGGGttTAAAgATcAGgCAACTATTGTGGTTTCATATaTCTTGCCTTACTT
 ta      a        c    a c t     cc    ac t  a   t g           c ct  c  ta      
         t                        a                               c             
                                                                                

      2250      2260      2270      2280      2290      2300      2310      2320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
* **          *      * *  **  *    *  ** ** *** * *  ** **       **  *       ** 
TTGGAAGAGAgACTGTaCTTGAaTATTTGGTCTCTTTcGGAGTGTGGATTCGCACTCCTCCAGCCTATAGACCACCAAAT
 c      c agtg  c     g     a  t  c  t  g        a            c t  c       t    
          t     t              a                                a               
          c     g                                                               

      2330      2340      2350      2360      2370      2380      2390      2400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
********* ****    * ***  *      ****  ****                   **     * *   * *  *
GCCCCTATCTTATCAACACTTCCGGAAACTACTGTTGTTAGACGACGgGACCGA---GGCAGGTCCCCTAGAAGAAGAAC
                              g     a     tata-a----     c tc              c    
                                               - g a                            
                                                                                

      2410      2420      2430      2440      2450      2460      2470      2480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *** ****  **   *  *        ** **   ***     ** **  **** **         ** *  * * ** 
TCCCTCGCCTCGCAGACGcAGATCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAATCTCAATGTTAGTATTCCT
                  a           a                  a         g c c            c   
                                                                                
                                                                                

      2490      2500      2510      2520      2530      2540      2550      2560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
** ** *     * *** *        ** ** ** **          **    **  *       ***      **   
TGGACTCATAAGGTGGGAAAcTTtACtGGGCTTTATTCcTCTACaGTaCCTATCTTTAATCCTGAATGGCAAACTCCTTC
                 g  t  c  g  a     c  t     t  c   gat     c     t     g  c  c  
                                               g    g            c              
                                               t                                

      2570      2580      2590      2600      2610      2620      2630      2640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 ** **    ** **  *    *      *          **  *    *     **  *  *        * ** *   
cTTTCCTAAgATTCATTTACAaGAgGACATTatTAATAGGTGTCAaCAATTTGTgGGCCCTCTcACTGTAAATGAAAAgA
t     a  a  c        t  a  t   gccg c  a   g g     c  a  t     t  a cg        a 
      g              c         t                               a  c             
      c              g                                                          

      2650      2660      2670      2680      2690      2700      2710      2720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
        *   *  *   *** **  * *  *  *           *  **     *  *  * *   * ** **    
GAAGAtTgAAATTAATTATGCCTGCTAGaTTcTATCCTAcCcaCACtAAATATTTgCCctTAGACAAAGGaATTAAACCT
 g   c a  g  g  c     c     g  t  c    atagt  c  g  c  a  tc gc t     g     g   
                                              a        c  a                     
                                                                                

      2730      2740      2750      2760      2770      2780      2790      2800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *  *               *   ** *   *          ** *** *  * *  **  **      **  *  * * 
TATTATCCaGATCAgGTAGTTAATCATTACTTcCAaACCaGACATTATTTACATACTCTTTGGAAGGCTGGtATTCTATA
        t  a  ta g           t  ta gg tc          g        c        g  gg c     
           c  a                       a                    g           a        
              c                                                                 

      2810      2820      2830      2840      2850      2860      2870      2880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*          *  *     *  * *        *   *    **     ******* *    *                
TAAGAGGGAAACcACACGTAGCGCaTCATTTTGCGGGTCACCATATTCTTGGGAACAAGAGCTACAgCATGGGAGGTTGG
    c a   t t  t        c     c  t           c  c                 t  -----------
                        t                                                       
                                                                                

      2890      2900      2910      2920      2930      2940      2950      2960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                         **   **  *          ** *        *   * ***   *  **  * * 
TcAtCaAAACCTCGCAAAGGCATGGGGACGAAtCTTTCTGTTCCCAAcCCTCTGGGATTCTTTCCCGATCATCAGTTGGA
at-c-c-c--------------          c  a     c  a  t  g         c             ac    
-- g - -                           g                                            
   - g                                                                          

      2970      2980      2990      3000      3010      3020      3030      3040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
 *  * **** * *   *  *    **    **  ** *    **       *        **             *   
CCCTGCATTCGGAGCCAAcTCAAACAATCCAGATTGGGACTTCAACCCCATCAAGGACCACTGGCCAgcAGCCAAcCAGG
t  g              t              c           t a gc   a  t  t      cag     t  a 
   c                                                               a            
                                                                                

      3050      3060      3070      3080      3090      3100      3110      3120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
*       *     *   * **  *     * ** **    ** **       *   **      **  *    *     
TAGGAGTGGGAGCATTCGGGCCAGGGcTCACcCCtCCACACGGcGGTaTTTTGGGGTGGAGCCCTCAGGCTCAGGGCATA
 g           t  t  c     at    t  c        a   g cc                      a    cg
                                                                                
                                                                                

      3130      3140      3150      3160      3170      3180      3190      3200
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                              *      ******                 ** ** ** **     *   
TTGaCcACAGTGtCAaCAaTTCCTCCTCCTGCCTCCACCAATCGGCAGTCAGGAAGGCAGCCTACTCCCATCTCTCCACC
c  g t  tt  c ggt g g     ca        g           a     c a     c  a     t        
     a                                                                          
                                                                                

      3210      3220      3230      3240  
....:....|....:....|....:....|....:....|..
                   *  ** *                
TCTAAG------AGACAGTCATCCTCAGGCCATGCAGTGGAA
   c              c           agca  a     
                                          
                                          
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